PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173070_xrri.t1
Common NameSOVF_173070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Dof
Protein Properties Length: 304aa    MW: 33707.7 Da    PI: 4.6576
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173070_xrri.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof98.93.3e-315196348
             zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48
                       ++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrn
  Sp_173070_xrri.t1 51 QAVLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRN 96
                       5678*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.2E-2752102IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-225496IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.07154108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQDVQSFNGG VVGGRLLLKR LNLQPQQEQI NNSINNYQFQ HQPQPQPQPQ QAVLKCPRCD  60
SLNTKFCYYN NYNLSQPRHF CKNCRRYWTK GGVLRNSSRS SSESSSTPPP AVGGVGLFQI  120
PEVENFGVSS DLEPLVDSTA NDIFSGDIGG FMSLITNNSN NTENANNSNN SVVVDEGNAA  180
ATASFTEFLQ NQQAVQEWDM EKICGGHHEE DKIARSVDLV VDPTVGIEDL LQNRGSNVGF  240
TTLDWHLTVG DNSDDNNNQG LYDVPDSSTV DHQAYWSHST TAVHHHDDHQ WSDSTSSHLP  300
LFLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855274.10.0dof zinc finger protein DOF5.4-like
TrEMBLA0A0K9QL550.0A0A0K9QL55_SPIOL; Uncharacterized protein
STRINGXP_010678379.12e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-27DOF zinc finger protein 1