PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_173070_xrri.t1

Common Name

SOVF_173070

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 304aa MW: 33707.7 Da PI: 4.6576

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_173070_xrri.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	98.9	3.3e-31	51	96	3	48
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 ++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrn Sp_173070_xrri.t1 51 QAVLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRN 96 5678*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-27	52	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-22	54	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.071	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MQDVQSFNGG VVGGRLLLKR LNLQPQQEQI NNSINNYQFQ HQPQPQPQPQ QAVLKCPRCD 60 SLNTKFCYYN NYNLSQPRHF CKNCRRYWTK GGVLRNSSRS SSESSSTPPP AVGGVGLFQI 120 PEVENFGVSS DLEPLVDSTA NDIFSGDIGG FMSLITNNSN NTENANNSNN SVVVDEGNAA 180 ATASFTEFLQ NQQAVQEWDM EKICGGHHEE DKIARSVDLV VDPTVGIEDL LQNRGSNVGF 240 TTLDWHLTVG DNSDDNNNQG LYDVPDSSTV DHQAYWSHST TAVHHHDDHQ WSDSTSSHLP 300 LFLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855274.1	0.0	dof zinc finger protein DOF5.4-like
TrEMBL	A0A0K9QL55	0.0	A0A0K9QL55_SPIOL; Uncharacterized protein
STRING	XP_010678379.1	2e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-27	DOF zinc finger protein 1