PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172710_fqon.t1
Common NameSOVF_172710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 316aa    MW: 35946.8 Da    PI: 9.8393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172710_fqon.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181762147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ed++l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  Sp_172710_fqon.t1 17 RGHWRPAEDDKLRKLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62
                       899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-1869112146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r+++T+eE+++l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
  Sp_172710_fqon.t1  69 RKPFTEEEEDRLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 112
                        789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1161267IPR017930Myb domain
SuperFamilySSF466891.27E-2915110IPR009057Homeodomain-like
SMARTSM007179.3E-151665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-271870IPR009057Homeodomain-like
CDDcd001672.08E-132061No hitNo description
PfamPF139211.8E-172080No hitNo description
PROSITE profilePS5129420.24968118IPR017930Myb domain
SMARTSM007171.1E-1568116IPR001005SANT/Myb domain
CDDcd001671.20E-1171111No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2071116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDSSDNEIK SSSSCPRGHW RPAEDDKLRK LVEQYGPQNW NSIAEKLQGR SGKSCRLRWF  60
NQLDPRINRK PFTEEEEDRL LTAHRIHGNK WALISRLFPG RTDNAVKNHW HVIMARMQRE  120
RSKQQSSNKR SASLITTNSS IIISNNNNNY STLNNNKERK ATSMANCWTP ISSMEKYRAS  180
SSTQQQQQPQ CLMGNRTSNY NSSSIFEHTN GYNMRFSCGS SSHGVGFGVN NNYNINNYYY  240
SDHHNKVVPS SYAPPFGQSK TTAMRRSSLV LERLEKEDEE EELGREGGGG GRRGGTMVSN  300
TKEMPFIDFL GVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-30171164103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-30171164103C-Myb DNA-Binding Domain
1msf_C2e-30171164103C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841689.10.0transcription factor MYB1-like
TrEMBLA0A0K9QJC00.0A0A0K9QJC0_SPIOL; Uncharacterized protein
STRINGXP_010692619.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-66myb domain protein 52