PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_169940_rdod.t1

Common Name

SOVF_169940

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 470aa MW: 51758.4 Da PI: 8.161

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_169940_rdod.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	183	241	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+l+c+rC s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ Sp_169940_rdod.t1 183 PEKILPCARCSSMDTKFCYFNNYNISQPRHFCKKCQRYWTAGGSMRNVPVGAGRRKSKN 241 78999***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	177	240	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-30	185	241	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.577	187	241	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	189	225	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MKCIAPLWES GGRNIPLVPL ENSTNYSYPT PTKGTRTTLL GTWAGTLQWV NKRRGTGKCK 60 RFSPQRALIR IALKDVSDDF DYDCESTCSA EDVLCSKQDR NRGNEESITK ETVVNKQEEE 120 PSSNSGLEEP KTPTTPSTNT ENPKTRANNK VCSSQDLSKK DQDQSDQASS NSESQDETLL 180 KKPEKILPCA RCSSMDTKFC YFNNYNISQP RHFCKKCQRY WTAGGSMRNV PVGAGRRKSK 240 NYAASQNHHL VIPGASNGLI HHVMGPDGAL VAFGMDSTHS NASQNFHTNG FFRSENETRS 300 SISNGGGTES VQPVPCFPYI SWQPGFPVSF YSTTSPQWGE NVAAAPYNLQ WLPTPSLNSD 360 QSSTTSSPNN STTLGKHSRS SKELEFENSR VVMPKTLRID DPLDASKSSI WTTLGIKNNN 420 HNVSSSIGRI AFLGESQQAK DMPDIEASSM VLQANPAAFS RSLAFHEIAQ

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MKCIAPLWES GGRNIPLVPL ENSTNYSYPT PTKGTRTTLL GTWAGTLQWV NKRRGTGKCK  60
RFSPQRALIR IALKDVSDDF DYDCESTCSA EDVLCSKQDR NRGNEESITK ETVVNKQEEE  120
PSSNSGLEEP KTPTTPSTNT ENPKTRANNK VCSSQDLSKK DQDQSDQASS NSESQDETLL  180
KKPEKILPCA RCSSMDTKFC YFNNYNISQP RHFCKKCQRY WTAGGSMRNV PVGAGRRKSK  240
NYAASQNHHL VIPGASNGLI HHVMGPDGAL VAFGMDSTHS NASQNFHTNG FFRSENETRS  300
SISNGGGTES VQPVPCFPYI SWQPGFPVSF YSTTSPQWGE NVAAAPYNLQ WLPTPSLNSD  360
QSSTTSSPNN STTLGKHSRS SKELEFENSR VVMPKTLRID DPLDASKSSI WTTLGIKNNN  420
HNVSSSIGRI AFLGESQQAK DMPDIEASSM VLQANPAAFS RSLAFHEIAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842985.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A0K9QK89	0.0	A0A0K9QK89_SPIOL; Uncharacterized protein
STRING	XP_010683163.1	1e-139	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	1e-58	cycling DOF factor 1