 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sp_169520_rsxc.t2 |
| Common Name | SOVF_169520 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 251aa MW: 28999 Da PI: 7.6965 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_169520_rsxc.t2 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey+s
Sp_169520_rsxc.t2 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAS 59
79***********************************************86 PP
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| 2 | K-box | 88.8 | 1e-29 | 85 | 176 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ e++++ s+ e+ kL +++e L+r+ Rh++Ged + Lsl+eLq+LeqqL+ +lk+iRskKn+l++e+i++l kkek++qe+n++L+k ++
Sp_169520_rsxc.t2 85 DSESQQEGSWAMEYPKLVSKLEALERNMRHYVGEDTDALSLRELQHLEQQLDVALKRIRSKKNQLMHESISQLNKKEKAMQEQNNQLSKLMM 176
37889999*******************************************************************************98766 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.32E-42 | 2 | 80 | No hit | No description |
| SuperFamily | SSF55455 | 7.19E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.6E-26 | 86 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.698 | 91 | 188 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYAST 60
DSSMEKILER YERYCYAERQ LVAPDSESQQ EGSWAMEYPK LVSKLEALER NMRHYVGEDT 120
DALSLRELQH LEQQLDVALK RIRSKKNQLM HESISQLNKK EKAMQEQNNQ LSKLMMENDK 180
KVVEQQKDEQ NPSQVFMLSA SNPFQFPSLT IGGAYHEMRE LQMESANLEA QGPSRTNTNI 240
PAWMFSHHVG E
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
