PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_168680_zrgt.t1

Common Name

SOVF_168680

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 747aa MW: 85335.1 Da PI: 6.9964

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_168680_zrgt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.5e-27	79	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY+eYAk++GF++++++s++sk+++ +++++f Cs++g + e++ ++r++ ++t+Cka+++vk++k+gkw+++++ +eHnHel p Sp_168680_zrgt.t1 79 KFYQEYAKSMGFTTSIKNSRRSKKSKDFIDAKFACSRYGVTPESDVG---SSRRSGIKKTDCKASMHVKRSKHGKWVIHEFIKEHNHELLP 166 6**************************************999877...889999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-24	79	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-7	239	278	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	472	508	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-5	473	506	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-7	483	510	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MDLRPTDCHP GAASSVVDQR EDICHGEGAS RNMVDLVSVV HDRDGGAGTC ATNSFLLEGD 60 IEIGPDNDLQ FESHEAAYKF YQEYAKSMGF TTSIKNSRRS KKSKDFIDAK FACSRYGVTP 120 ESDVGSSRRS GIKKTDCKAS MHVKRSKHGK WVIHEFIKEH NHELLPALAY YFRIHRNVKL 180 VEKNNIDILH AVSERTKKMF VDMSRQSASF FNHGSLRHAL GSQLDKGNHL VLDERDAQFL 240 LDYFIAMGGS APQVIITDQH PSIKSAIQEV FPNTRHCFHL CNVLEKFPEN LAHVTKRHEN 300 FTGKFNKCIF KSWTDEQFEL RWWKMVGRFD LQEDDWIRSL YEDRKKWVPL YISDIFLAGM 360 SPPHRTESVN SFFDKYIQRK LTLKEFVKQY GAILQNRYEE EAIADFDTCN KQPALKSPSP 420 WEKQMSTIYT HAIFKKFQVE VLGVVGCHPK KDGEDGTSIT YRVDDCEKDE TFFVAWDETN 480 SQVSCLCRSF EYRGFLCRHA MLVLQICGIS SIPSQYILRR WTKDAKTRQL MVEGTDRLQT 540 RAQRYVALCK QAIELSEEGS LTQESHNISL RTLVDTLKNC VSVNNMNRNA IEVGDTFCAH 600 DIVEPYQGNM STRTSKKKNA VKKRKVTSET DVMLTDAEDN LHQLESLTSD GMSLNNYYGS 660 QQNVPGLVQL NLMEPPHDSY YVDQESIQGL GQLNSLGPNH EGFFEAEQSV HGLGHLDFRS 720 SSSFSYSLQD DNNLRSTQLR GDAARHT

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MDLRPTDCHP GAASSVVDQR EDICHGEGAS RNMVDLVSVV HDRDGGAGTC ATNSFLLEGD  60
IEIGPDNDLQ FESHEAAYKF YQEYAKSMGF TTSIKNSRRS KKSKDFIDAK FACSRYGVTP  120
ESDVGSSRRS GIKKTDCKAS MHVKRSKHGK WVIHEFIKEH NHELLPALAY YFRIHRNVKL  180
VEKNNIDILH AVSERTKKMF VDMSRQSASF FNHGSLRHAL GSQLDKGNHL VLDERDAQFL  240
LDYFIAMGGS APQVIITDQH PSIKSAIQEV FPNTRHCFHL CNVLEKFPEN LAHVTKRHEN  300
FTGKFNKCIF KSWTDEQFEL RWWKMVGRFD LQEDDWIRSL YEDRKKWVPL YISDIFLAGM  360
SPPHRTESVN SFFDKYIQRK LTLKEFVKQY GAILQNRYEE EAIADFDTCN KQPALKSPSP  420
WEKQMSTIYT HAIFKKFQVE VLGVVGCHPK KDGEDGTSIT YRVDDCEKDE TFFVAWDETN  480
SQVSCLCRSF EYRGFLCRHA MLVLQICGIS SIPSQYILRR WTKDAKTRQL MVEGTDRLQT  540
RAQRYVALCK QAIELSEEGS LTQESHNISL RTLVDTLKNC VSVNNMNRNA IEVGDTFCAH  600
DIVEPYQGNM STRTSKKKNA VKKRKVTSET DVMLTDAEDN LHQLESLTSD GMSLNNYYGS  660
QQNVPGLVQL NLMEPPHDSY YVDQESIQGL GQLNSLGPNH EGFFEAEQSV HGLGHLDFRS  720
SSSFSYSLQD DNNLRSTQLR GDAARHT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858804.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0K9QKJ9	0.0	A0A0K9QKJ9_SPIOL; Uncharacterized protein
STRING	XP_010675660.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]