PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

ERF

Protein Properties

Length: 171aa MW: 19189.4 Da PI: 8.6778

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_168300_azsd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.4e-17	15	64	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr+r++lg++ t+ Aa+a++ a +l+g Sp_168300_azsd.t1 15 PYKGIRMRK-WGKWVAEIREP---NKRTRIWLGSYSTPVAAARAYDTAVYYLRG 64 69***99.******9...337***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.85E-21	15	73	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-36	15	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.891	15	72	IPR001471	AP2/ERF domain
CDD	cd00018	6.14E-26	16	74	No hit	No description
Pfam	PF00847	5.2E-11	16	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	16	27	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.0E-30	16	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	54	74	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEAGSTKKRE RAEKPYKGIR MRKWGKWVAE IREPNKRTRI WLGSYSTPVA AARAYDTAVY 60 YLRGPSARLN FPELLMGECR LSDLSAASIR KKAIEVGARV DALETAFQRS NSNHSITHNN 120 TNANSNSSII TSAAVEDRER SPGFSGCGWV VDEKPDLNKV PEPEDSEEWD D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-14	16	77	15	78	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856241.1	1e-124	ethylene-responsive transcription factor ERF010-like
Swissprot	Q9FH94	2e-54	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A0K9QM16	1e-123	A0A0K9QM16_SPIOL; Uncharacterized protein
STRING	XP_010679510.1	3e-88	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	5e-52	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]