PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_168070_wemo.t1
Common NameSOVF_168070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92746.2 Da    PI: 5.9971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_168070_wemo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182178457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sp_168070_wemo.t1 21 YVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                       6789****************************************************97 PP
2START1686.4e-531653732205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+++l+d++ W ++++++++++v s+g  g++
  Sp_168070_wemo.t1 165 IAEETLTEFLSKATGTAIEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVADILKDRLSWYRDCRAVDVMNVMSTGngGTI 255
                        789*******************************************************.99*******9*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+al++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae  pSg+li+p+++g+s +++v+h+dl+ + +++
  Sp_168070_wemo.t1 256 ELLYMQLYALTTLAPaRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEIMPSGYLIRPCEGGGSIIHIVDHMDLEPWRVPE 347
                        ***********************************************9888899************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++  ++t++a+l+++++
  Sp_168070_wemo.t1 348 VLRPLYESSTMLSQRTTMAALRQLRQ 373
                        **********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3211579IPR001356Homeobox domain
SMARTSM003899.6E-161783IPR001356Homeobox domain
CDDcd000861.97E-162080No hitNo description
SuperFamilySSF466892.48E-162081IPR009057Homeodomain-like
PfamPF000463.2E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182278IPR009057Homeodomain-like
CDDcd146861.05E-572110No hitNo description
PROSITE profilePS5084825.216155370IPR002913START domain
CDDcd088757.63E-74159374No hitNo description
Gene3DG3DSA:3.30.530.202.7E-21163371IPR023393START-like domain
SuperFamilySSF559617.28E-34164371No hitNo description
SMARTSM002345.2E-35164374IPR002913START domain
PfamPF018523.1E-50165373IPR002913START domain
PfamPF086701.3E-50698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MMAVSSACRD ANKMAVDAGK YVRYTPEQVE ALERLYHDCP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQGVNR KLTAMNKLLM EENDRLQKQV GQLVYENSYF  120
RQHTQNAATL ATTDTSCESV VTSGQQQTTS QRPPKDASPA GLVSIAEETL TEFLSKATGT  180
AIEWIQMPGM KPGPDSIGII AISHGCTGVA ARACGLVSLE PTRVADILKD RLSWYRDCRA  240
VDVMNVMSTG NGGTIELLYM QLYALTTLAP ARDFWLMRYT SLLEDGSVVI CERSLNNTQN  300
GPSMPSVQHF VRAEIMPSGY LIRPCEGGGS IIHIVDHMDL EPWRVPEVLR PLYESSTMLS  360
QRTTMAALRQ LRQISQEICQ PNVTGFGRRP AALRALSQRL SKGFNEAVNG FMDEGWSMME  420
SDGIDDVTLL VNSSPSKMMG ENQFYSNGFP AAGTAVLCAR ASMLLQNVPP AVLLRFLREH  480
RSEWADSGID AYSAAAVKAA PCTIPVARTG CVGGQVILPL AHTIENEEFM EVVRLENLGH  540
YREDMFMPGD IFMLQLCSGV DENAVGACAE LIFAPIDASF SDDAPLLPSG FRIIPIDSSK  600
DVSSPKCTLD LTSALEVGHA GNKALADNNG SRSGKSVMTI AFQFAFEVHL QESVASMARQ  660
YVRSIISSVQ RVASALSPSR FGSLNGSPLS PGTPEAQTLA RWISQSYRCY LGVELLKPSN  720
EGGESTLKTL WNHSDAILCC SLKALPVFTF ANQAGLDMLE TTFVALQDIT LEKIFDEQGR  780
KTLFNELPQI MQQGFICLQG GICMSSMGRP ISYERAVAWK VFNDAEDAQC MCFMFINWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847759.10.0homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0K9QMP50.0A0A0K9QMP5_SPIOL; Uncharacterized protein
STRINGXP_010668539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]