PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_167170_rnng.t1
Common NameSOVF_167170
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 304aa    MW: 34088.4 Da    PI: 6.3115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_167170_rnng.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.1e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEdellv++++++G+g+W++ ++  g+ R++k+c++rw +yl
  Sp_167170_rnng.t1 14 KGPWTSEEDELLVKYINKHGNGNWRSLPKNAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE++l +++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Sp_167170_rnng.t1  67 RGPFSPEEEKLVIQLHAILGNR-WAAIAARLP-GRTDNEIKNLWNTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.63961IPR017930Myb domain
SuperFamilySSF466893.56E-3111108IPR009057Homeodomain-like
SMARTSM007171.4E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-171461IPR001005SANT/Myb domain
CDDcd001672.12E-121661No hitNo description
PROSITE profilePS5129425.82162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665117IPR009057Homeodomain-like
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002496.1E-1667112IPR001005SANT/Myb domain
CDDcd001679.12E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTSE EDELLVKYIN KHGNGNWRSL PKNAGLLRCG KSCRLRWTNY  60
LKPDIKRGPF SPEEEKLVIQ LHAILGNRWA AIAARLPGRT DNEIKNLWNT HLRKRLVCMG  120
LDPTTHEPLP TPPGPSIKSP SSPSTRHMAQ WESARLEAEI RLSNESLQSS PGFHDSDHFL  180
RLWNSEVGES FRTYETKEKI ACQSESPFSQ ASTCTTKCAS TSGVTVDNHD EEMVVCKNLI  240
KSEVVDVNTR SDSSSSNEVD DSSESTALQL LLDFPGYNDM SFLVDPVDGY YIFPSLMNPQ  300
MSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849574.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0K9QL050.0A0A0K9QL05_SPIOL; Uncharacterized protein
STRINGXP_010672001.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-105myb domain protein 17