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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_165360_pyos.t1 | ||||||||
Common Name | SOVF_165360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 54249.4 Da PI: 5.2592 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 305 | 352 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq Sp_165360_pyos.t1 305 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 352 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.44E-11 | 299 | 356 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-17 | 299 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 301 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 301 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 305 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-10 | 307 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MEKELNCSNL MEMSSEQLAN CYFHPNWENS NDQNDPFESA LSSIVSSPTT TGVAASNGGG 60 GGMMIRELIG RLGSICDSEG GEVSPQQSCI AATGNNSTNN SCYSTPLNSP PSKFNLSSLM 120 MIMGNHNNNN NNYPIQSNLG SFNPDPGFVE RAAKLSCFGN NLADLVGVNC SNNNNSRLLV 180 SKLESGKLSR VNSDKKLGEN GELGDSREGS SVSEQNPGVE IGAKPQIDAT SRKRKSASKA 240 KVKDTSVKDD KVEVENEETN AKRSKIDEKE GKKEQNTEQN AGESKPEPFK DYIHVRARRG 300 QATDSHSLAE RVRREKISER MKFLQDLVPG CNKVTGKATV LDEIINYVQS LQRQVEFLSM 360 KLATVSPRME FNMEALLSKD MFQSRGSSVQ QQTMYPIDHN SAQGFPFGYQ SNQQMSLPLP 420 NGIENPFSAN PMNGTGIRRN PSIPLPSIDG FVDSMTQLPT LWEDDLQSLV QMGIVQNQTQ 480 NVPSGTIPNG QMKVEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 235 | SRKRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021848185.1 | 0.0 | transcription factor bHLH62-like | ||||
TrEMBL | A0A0K9QN73 | 0.0 | A0A0K9QN73_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673318.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 9e-86 | bHLH family protein |