PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_164060_uses.t1
Common NameSOVF_164060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 374aa    MW: 42910.9 Da    PI: 8.4467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_164060_uses.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012126148123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C  Cg+ F+ ++ L  H ++H
  Sp_164060_uses.t1 126 YVCRVCGRNFNINDKLIDHFKVH 148
                        9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.2E-846125IPR029060PIN domain-like
SuperFamilySSF576676.07E-6124152No hitNo description
PROSITE profilePS5015712.092126153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-6126151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
CDDcd061671.57E-14135277No hitNo description
PfamPF019366.2E-8189277IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.2E-8210265IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRHILDELHV GRPKLLNPCF QFARFFHDER YPSVNSSKPA LVKLPKTKIG VFWDLENKPP  60
KSVSPFEAAI KLKRAVSSFG VVRYMVAYAN QHAFSYVPPA VRELRNERKV LNRLENKGVI  120
KSVEPYVCRV CGRNFNINDK LIDHFKVHER EHQKRLNQIE SAKGRKRVIL VGKYAMKMEK  180
YKNAARDILT PKVGYGLGDG LKRAGFWVKM VSDEPQAADV ALKNHIVDMM DHRRIQCLVL  240
VSDDSDFLDV LKEAKERCLK TVVVGDNDDG VLKRNADASF SWREILIGKA KTQAVSVVGQ  300
WRDRDVLKSL EWSYNPEVER DAHKGSNDSD FEDVQVEDEE SEDIIEQDHY PLLQNDDRPW  360
WELDSNAGGP SSNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858554.10.0uncharacterized protein LOC110797748
TrEMBLA0A0K9QM030.0A0A0K9QM03_SPIOL; Uncharacterized protein
STRINGXP_010676677.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-123C2H2 family protein