PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_163540_ctfk.t1
Common NameSOVF_163540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 426aa    MW: 44650.5 Da    PI: 5.6459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_163540_ctfk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20209258255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sp_163540_ctfk.t1 209 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 258
                        7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.646209266IPR001471AP2/ERF domain
CDDcd000182.80E-20209267No hitNo description
PfamPF008471.5E-13209258IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32209267IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22209266IPR016177DNA-binding domain
SMARTSM003803.5E-37209272IPR001471AP2/ERF domain
PRINTSPR003671.6E-11210221IPR001471AP2/ERF domain
PRINTSPR003671.6E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MCVPKVANQR EYEGFTSSGG RGTNGGDGER DSAVGSGEEV PAFRPNWETS AMVMALTDVV  60
SGRGGYDTEG GGGGGGGGGG WNEPYYGFTT TSLVGQKRER EESGIGDGGG GELGDITMMY  120
GGFGGGEAKG SPSGGGGGGG EGESSSSASG VKDEMHTPSP LQQIHSHSHP SSTVSTSSTP  180
RSVNQPPPIT TGTTTSALEE TQVGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFE  240
TAEAAARAYD EAALRFRGNR AKLNFPEFVQ SVPPPARPSL TTTANISPAP APESVFPPSR  300
LSQTINFQPQ QQQQHTTSDI ARDYWEYSQL LQSSGDFNFP GLEHILYPSI SGQLMGPPSL  360
SFSSPPLSSS SSSSVTPSNM QLPPNFPGDQ TTFRPPSQGG SSSGSNAPGG YWSQYGSPYH  420
PPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23208266160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840309.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0K9QNR30.0A0A0K9QNR3_SPIOL; Uncharacterized protein
STRINGXP_010681129.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-28ethylene response factor 110