PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_163340_tswk.t1
Common NameSOVF_163340
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 263aa    MW: 29366.1 Da    PI: 5.3334
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_163340_tswk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-30110163155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+++e+L G++kA+Pkti+e+m+v+gLt+e+v+SHLQkYRl
  Sp_163340_tswk.t1 110 RPRLVWTPQLHKRFVDVIEHL-GIDKAVPKTIMEMMNVEGLTRENVASHLQKYRL 163
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.326107166IPR017930Myb domain
SuperFamilySSF466892.51E-20108167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-31109168IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25111163IPR006447Myb domain, plants
PfamPF002495.7E-8113162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEDQWEMGLP LPEDLTPISQ SLISPGLALA FGITPDNTRA QFDLNLHDNC STYSPSEENL  60
ESLSLRLFSG RSDFDCSNRM RRGDSFVNDE VNSGSKDDGD ENGLNRAVKR PRLVWTPQLH  120
KRFVDVIEHL GIDKAVPKTI MEMMNVEGLT RENVASHLQK YRLYLKRMEG LSSEGQSNPR  180
RDTPMFDCDG FGSMTMPHPH PPPPQQQQQC NSLPLMPMPM VVPPPGAAYG FGHLGLPLPS  240
SSPSGYCGLE SGAYNMFWNR QRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32110166157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835475.11e-170transcription factor PCL1-like
TrEMBLA0A0K9QM920.0A0A0K9QM92_SPIOL; Uncharacterized protein
STRINGXP_010690987.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-50G2-like family protein