PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_162090_wpom.t1
Common NameSOVF_162090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 308aa    MW: 34872.2 Da    PI: 8.107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_162090_wpom.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30148207159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK+ ++++ pr+YY+C+ a +C+vkkkv+rsa+dp++++ tYegeHnh+
  Sp_162090_wpom.t1 148 VKDGYQWRKYGQKVTRDNPSPRAYYKCANApECQVKKKVQRSADDPSILVATYEGEHNHP 207
                        58**************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29145210IPR003657WRKY domain
SuperFamilySSF1182901.01E-25147209IPR003657WRKY domain
PROSITE profilePS5081127.313147209IPR003657WRKY domain
SMARTSM007748.5E-35148208IPR003657WRKY domain
PfamPF031063.0E-25149207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MESSSNLVLD TSLGFNLNLN LCHNPEIFDD KTQVDERKSG NLEEELNRMN IENKKLTKML  60
ASMCKNYSML QNQLIGLISP TSKGENEDQN PRKRKFIEAV ECGIQGNTEQ SCISYDDSFK  120
RVTLLSSKPK ITNKMLIRTD KSDISLVVKD GYQWRKYGQK VTRDNPSPRA YYKCANAPEC  180
QVKKKVQRSA DDPSILVATY EGEHNHPQPN SRDHLDQQVV LSSSQSVNNN TNNVIRSPNT  240
LNLDMINHNY PNNMEKTVDY NDVDTKALQR LLVEQMASSL TKDPSFTSAL AAAISGKISN  300
NAYTQRWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211472091677Probable WRKY transcription factor 4
2lex_A3e-211472091677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840235.10.0probable WRKY transcription factor 40
RefseqXP_021864705.10.0probable WRKY transcription factor 40
TrEMBLA0A0K9QMM80.0A0A0K9QMM8_SPIOL; Uncharacterized protein
STRINGXP_010667511.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-71WRKY DNA-binding protein 40