PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_159790_wkoi.t1
Common NameSOVF_159790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 474aa    MW: 51484.4 Da    PI: 4.7357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_159790_wkoi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053634001254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sp_159790_wkoi.t1 363 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 400
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-12361418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-6361405No hitNo description
Gene3DG3DSA:4.10.280.103.3E-9365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGEEFQGGVC GGTWWNPPHN LFSGGLSSPC SVSQLSGGGG GGGSFDMGGF GWSNEVVVKG  60
NIKSNNNNNY NNNNNSVFDN LVFPDQMDSS LDILGFGLSP TCSTTDWNHH NLLCNNGSNN  120
EANFDSMLQD SLNNNDSIRL CSYEMGGTTT SPNIIMNSCN FSTQDASPPL ASNSSGDSST  180
ITTCDGGGLA TSFPMNSSAS YLIQSLFDDC DESHQVLQQQ EQPINMPHHQ FINNSSNNNN  240
NNYGCSLDSS NEVISSNSWV KTSPIPLLQS NKLDGGISAL INDHGQVFSG QYSPTTLNSI  300
RASLLNSLQS RSRAPSSSTS LANKVNSEEH HRDSKKNTSN NDQPPTKRLR IETPSPLPTF  360
KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVHVLSTP YLKSETAMQQ  420
QQESDKLKDD EESKQDLRTR GLCLVPISST YPVAQETPVD FWTPTFGGTT TTFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846815.10.0transcription factor bHLH112
TrEMBLA0A0K9QND00.0A0A0K9QND0_SPIOL; Uncharacterized protein
STRINGXP_010665766.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-46bHLH family protein