PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_159490_wski.t1
Common NameSOVF_159490
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 541aa    MW: 58305.1 Da    PI: 4.8596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_159490_wski.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08103149455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+ + + f  L  ++P +     kK +K ++L +A++++k+Lq
  Sp_159490_wski.t1 103 DHILAERKRRELLSHLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKQLQ 149
                        6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1390158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.49199148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-12103157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6103149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-10104153No hitNo description
SMARTSM003539.5E-10105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:2.40.40.105.1E-32305432IPR009009RlpA-like protein, double-psi beta-barrel domain
SuperFamilySSF506859.07E-29305437IPR009009RlpA-like protein, double-psi beta-barrel domain
PROSITE profilePS5084222.102334438IPR007112Expansin/pollen allergen, DPBB domain
PfamPF033306.1E-13355428IPR009009RlpA-like protein, double-psi beta-barrel domain
Gene3DG3DSA:2.60.40.7608.4E-26433540IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF495901.16E-16439536IPR007117Expansin, cellulose-binding-like domain
PfamPF013571.3E-13440520IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS5084312.889452536IPR007117Expansin, cellulose-binding-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEAFLDEELA ATLGEDFPYS DNFDCNLIEQ YLSTPLISDC TDNNIINDGD NNNVEESKPS  60
KTKGAVKKEA VKKRAASKKK EAVTKEAVSG DTKRKRQPSQ VQDHILAERK RRELLSHLFI  120
SLSAIVPGLK KIDKTSVLGE AIKHMKQLQE KVKVLEQVAA KRTVGSVVVV KRSKVIMVDD  180
NGSSDNNGNV SSSTVDDSCT SATSGRSANG GGGGVSAGVG GGGGGDDNVS SFPEIEVKIC  240
GNTMLLRVYC EQQKGILTKL FAEVDNHDLR ITNSSVVPFE DFALDITIVA QNLLHLSICL  300
LLLRSVANAQ NCSDCIVHSR ASYYPNSDEN GTDHGACGFG TFGATVNRGD VSTASDLYRN  360
GVGCGACYQV KCTNSNYCSD NGVTVVITDQ GSGDNTDFIL SEHAFSKMAQ TTDAAASLRS  420
LGVVDIEYQR VSCSYPGQNI TIKIDESSSY PSYLAFAIYY QQGEKDITAV QLCETQSFTC  480
KLLQRDHGAV WTSTPPPSGP LSIRMLFSDG DEADDTWVVP VNNIPQDWQR GAIYDSGVQV  540
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2hcz_X1e-2531953922243Beta-expansin 1a
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193111RKRQPSQVQDHILAERKRR
2107112ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9QQ090.0A0A0K9QQ09_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-19bHLH family protein