PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_159490_wski.t1 | ||||||||
Common Name | SOVF_159490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 541aa MW: 58305.1 Da PI: 4.8596 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 103 | 149 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L ++P + kK +K ++L +A++++k+Lq Sp_159490_wski.t1 103 DHILAERKRRELLSHLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKQLQ 149 6899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-13 | 90 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.491 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-12 | 103 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 103 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.84E-10 | 104 | 153 | No hit | No description |
SMART | SM00353 | 9.5E-10 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:2.40.40.10 | 5.1E-32 | 305 | 432 | IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
SuperFamily | SSF50685 | 9.07E-29 | 305 | 437 | IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
PROSITE profile | PS50842 | 22.102 | 334 | 438 | IPR007112 | Expansin/pollen allergen, DPBB domain |
Pfam | PF03330 | 6.1E-13 | 355 | 428 | IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
Gene3D | G3DSA:2.60.40.760 | 8.4E-26 | 433 | 540 | IPR007117 | Expansin, cellulose-binding-like domain |
SuperFamily | SSF49590 | 1.16E-16 | 439 | 536 | IPR007117 | Expansin, cellulose-binding-like domain |
Pfam | PF01357 | 1.3E-13 | 440 | 520 | IPR007117 | Expansin, cellulose-binding-like domain |
PROSITE profile | PS50843 | 12.889 | 452 | 536 | IPR007117 | Expansin, cellulose-binding-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MEAFLDEELA ATLGEDFPYS DNFDCNLIEQ YLSTPLISDC TDNNIINDGD NNNVEESKPS 60 KTKGAVKKEA VKKRAASKKK EAVTKEAVSG DTKRKRQPSQ VQDHILAERK RRELLSHLFI 120 SLSAIVPGLK KIDKTSVLGE AIKHMKQLQE KVKVLEQVAA KRTVGSVVVV KRSKVIMVDD 180 NGSSDNNGNV SSSTVDDSCT SATSGRSANG GGGGVSAGVG GGGGGDDNVS SFPEIEVKIC 240 GNTMLLRVYC EQQKGILTKL FAEVDNHDLR ITNSSVVPFE DFALDITIVA QNLLHLSICL 300 LLLRSVANAQ NCSDCIVHSR ASYYPNSDEN GTDHGACGFG TFGATVNRGD VSTASDLYRN 360 GVGCGACYQV KCTNSNYCSD NGVTVVITDQ GSGDNTDFIL SEHAFSKMAQ TTDAAASLRS 420 LGVVDIEYQR VSCSYPGQNI TIKIDESSSY PSYLAFAIYY QQGEKDITAV QLCETQSFTC 480 KLLQRDHGAV WTSTPPPSGP LSIRMLFSDG DEADDTWVVP VNNIPQDWQR GAIYDSGVQV 540 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2hcz_X | 1e-25 | 319 | 539 | 22 | 243 | Beta-expansin 1a |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 111 | RKRQPSQVQDHILAERKRR |
2 | 107 | 112 | ERKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9QQ09 | 0.0 | A0A0K9QQ09_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-19 | bHLH family protein |