PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_157670_ouaa.t1 | ||||||||
Common Name | SOVF_157670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 23884.4 Da PI: 5.1613 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 110 | 156 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L +++P + kK +K ++L +A++++++Lq Sp_157670_ouaa.t1 110 DHIMAERKRRELLGQLFISLSTIIPGL-----KKIDKTTVLGEAIKHMRQLQ 156 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.88E-8 | 100 | 159 | No hit | No description |
PROSITE profile | PS50888 | 12.976 | 106 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-7 | 110 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 110 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-14 | 110 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 112 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEIDVDPIFS NPYHQSDTMD EQLLAVTSDT ASPQEDFDCD LIEQFILSPP HHHLSDFNDD 60 DNNNDDNDGV SFNVQESPPL MKQKKETKKK QAVSSVNTTK RRRQPRQVQD HIMAERKRRE 120 LLGQLFISLS TIIPGLKKID KTTVLGEAIK HMRQLQEKVN VLEEIAAERT VESFVIDYSA 180 SGGSSGGGGG ADGGGGGSDR SLPAIEVKTX GNFKKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 118 | RRRQPRQVQDHIMAERKRR |
2 | 114 | 119 | ERKRRE |
3 | 184 | 197 | SGGGGGADGGGGGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839235.1 | 1e-109 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0K9QR42 | 1e-157 | A0A0K9QR42_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683065.1 | 7e-43 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-22 | bHLH family protein |