PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_156440_psht.t2

Common Name

SOVF_156440

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 257aa MW: 28781.7 Da PI: 7.4671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_156440_psht.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+riN+++ L++l+P + k + a +L ++Y++sLq Sp_156440_psht.t2 146 SHSLAERVRRERINDKLKLLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 193 8*************************8....355888888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.16E-11	140	197	No hit	No description
SuperFamily	SSF47459	1.57E-16	140	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.25	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	142	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:2000488	Biological Process	positive regulation of brassinosteroid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEELTTDIQK VLKPAAVFSQ LNSELFNTFP GLNQSLSCHV QDYLSINNIL NNVINTNQPN 60 EQLPFHLPES ISNHHNKLFC TNDETPATAS QSPTGFVCGG GNKSIVKNKS AAGKKRKRKA 120 GEDKEDVEKP KEVIHVRAKR GQATDSHSLA ERVRRERIND KLKLLQDLVP GCYKTMGMAV 180 MLDVIINYVQ SLQNQIEFLS MKLSAASMFY DFNSPEAEAI ENLQRLTTTN LNCCDTQEIE 240 RAAREGQGGM LPRSWPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	KKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859438.1	0.0	transcription factor bHLH75-like
Swissprot	A4D998	1e-49	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A0K9QPE7	0.0	A0A0K9QPE7_SPIOL; Uncharacterized protein
STRING	XP_010681492.1	1e-114	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-48	BR enhanced expression 1

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]