PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_156440_psht.t1
Common NameSOVF_156440
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 244aa    MW: 27317 Da    PI: 7.5467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_156440_psht.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09146193455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+riN+++  L++l+P +     k +  a +L   ++Y++sLq
  Sp_156440_psht.t1 146 SHSLAERVRRERINDKLKLLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 193
                        8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-11140197No hitNo description
SuperFamilySSF474591.44E-16140211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEELTTDIQK VLKPAAVFSQ LNSELFNTFP GLNQSLSCHV QDYLSINNIL NNVINTNQPN  60
EQLPFHLPES ISNHHNKLFC TNDETPATAS QSPTGFVCGG GNKSIVKNKS AAGKKRKRKA  120
GEDKEDVEKP KEVIHVRAKR GQATDSHSLA ERVRRERIND KLKLLQDLVP GCYKTMGMAV  180
MLDVIINYVQ SLQNQIEFLS MKLSAASMFY DFNSPEAEAI ENLQEIERAA REGQGGMLPR  240
SWPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118KKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859438.11e-169transcription factor bHLH75-like
TrEMBLA0A0K9QPE20.0A0A0K9QPE2_SPIOL; Uncharacterized protein
STRINGXP_010681492.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.24e-49BR enhanced expression 3