PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_155270_iufk.t1
Common NameSOVF_155270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 395aa    MW: 45516.5 Da    PI: 5.8745
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_155270_iufk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-312780255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prl+WtpeLH++F++a+e+LGG++kAtPk +l++m+v g+t++hvkSHLQ+YR+
  Sp_155270_iufk.t1 27 PRLKWTPELHRCFIHAIERLGGKHKATPKLVLQVMDVRGITISHVKSHLQMYRS 80
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6852383IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-292382IPR009057Homeodomain-like
SuperFamilySSF466895.02E-152483IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-242681IPR006447Myb domain, plants
PfamPF002494.9E-82879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEQVVNNNNN NNNSGNGVRH YVRSKNPRLK WTPELHRCFI HAIERLGGKH KATPKLVLQV  60
MDVRGITISH VKSHLQMYRS MKNDLTTQGD KSLNQERKQA FENHHNYNSN NASTACNYII  120
EEEEKENEDV GLHLSSPNIT NHLLQPTPFP PSKRSRMGMM MMMMREKMES RQRQRMGIMS  180
EEKEGGTKDP KMYCLIDDYK SQLESIYNNL KEEEEEEEEE EYESSGLLEE SGLNNIIRWQ  240
HQQQPDCFPL LPILPPQDPV YEFHHLLALQ DHQSHFLNFQ EAMSYEQLSD QKQAHYFHNS  300
KAAFVASGKP NKDENNEDYE ELAVGRRRDE CGLSLSLSLQ QEASPLLNHR SSNVSSTNVS  360
EFGDQAVSSY SSSSSTAWDN HQHSLNLDLS ISLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-162882458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680052.11e-140PREDICTED: myb family transcription factor PHL11
TrEMBLA0A0K9QPU90.0A0A0K9QPU9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010680052.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.18e-31G2-like family protein