PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_155000_eooz.t1
Common NameSOVF_155000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 281aa    MW: 29698.8 Da    PI: 7.0331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_155000_eooz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13217262655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  Sp_155000_eooz.t1 217 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKNLQ 262
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.71211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16214275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-12215266No hitNo description
Gene3DG3DSA:4.10.280.102.3E-16216275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10217262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQDTAGGGGG TAGGGGGSEL TRASGLARFR SVPATWLDAL LEDDDSLKLS GPHNTHQGGL  60
TQLLTAGTTT SAGGTGSVPA SRPAPSYISA AADPGFFEGG GGAQPPGNTV AFQRMNSSPA  120
EFLSANIDGY FSSFGIPSNY DFGGGGSSVD VSSSGKRLRD NDSEQHSPNF SSQRRGDHSG  180
QLSTASSLVE MEMEKLLEDS VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN  240
MDKQTNTADM LEEAVEYVKN LQKQIQELTE QQKKCKCVAK S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847922.10.0transcription factor bHLH81-like
SwissprotQ9C8P86e-76BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0K9QRI50.0A0A0K9QRI5_SPIOL; Uncharacterized protein
STRINGXP_010682704.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-61bHLH family protein