PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_153770_rpfo.t1
Common NameSOVF_153770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CPP
Protein Properties Length: 586aa    MW: 62871 Da    PI: 7.3462
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_153770_rpfo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-13107146242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Sp_153770_rpfo.t1 107 RQKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCCNNVEN 146
                        689*************************.********9875 PP
2TCR51.12.7e-16190229140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Sp_153770_rpfo.t1 190 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 229
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-13106146IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.314107230IPR005172CRC domain
PfamPF036386.9E-10108143IPR005172CRC domain
SMARTSM011143.5E-20190231IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.1E-13193228IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEEREKGGNS PPKPTTAAEF PAKKLARQLD FTSLSGASQP PSTTVAQPPS TSSEQPLPPQ  60
SQPVLIAPSQ QPAAQTPPLP SMRVVKPESP KARPRANVEA KDGTPKRQKQ CNCKHSRCLK  120
LYCECFASGV YCDGCNCNNC CNNVENEAAR RDAVEATLER NPNAFRPKIA SSPHGIRDRR  180
EDAGDVVVAK HNKGCHCKKS GCLKKYCECF QANILCSENC KCIDCKNFEG SEERQALFHG  240
DHANNLTHMQ QAANAAITGA IGSSGFASTP NSRKRKGQEL LFGPASKDPS LSRVGQFQQA  300
SHVKTSGPSA VSSGPASRAA YSVSLGSSKF TYRSLLADII QPQDVKELCS VLVVLSDEAA  360
QTIAESNNAD EKRACDEGDV PRASPTQDRS QSPDESDVNT VLNDSVNGNQ TDSVVPDDSN  420
LDGNDLPKSR PMSPLTLALR CDEQDTMFMA AGSPSGLGNH IHSSSSHLPE QSTSEVYAEQ  480
ERIVLTKFRD CLNRLITFGE LKETKCSSLA RSDYTSFQDI GNGHTAKLRS DGPNQQQHLN  540
NGVSKPVIPA PTKTPAMIAA TITAVPSNNL SSQNPPTENG DVKPSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3210823911132Protein lin-54 homolog
5fd3_B1e-3210823911132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862324.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9QRU40.0A0A0K9QRU4_SPIOL; Uncharacterized protein
STRINGXP_010688245.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-178Tesmin/TSO1-like CXC domain-containing protein