PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_152780_ykpj.t1

Common Name

SOVF_152780

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 447aa MW: 49588.5 Da PI: 9.8654

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_152780_ykpj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	217	239	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C ++F ++nL+ H+ + H Sp_152780_ykpj.t1 217 SCPHCAEVFMKPENLELHQAVrH 239 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	216	239	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.63E-22	241	446	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-12	242	445	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAKTTNPRKL TTEIHRTKRS QQKQKQQQPK PQPLPSWVVM RNILTCKHLE VEQQQPQEQT 60 SPTQKNKQQK HAAAVLEENN SKNKNKKMRC SGSLCNNTKV MQRPDSASPE ILQRKSRGGT 120 TTTTAAAAST STTSSSSLEG SSRSIKSPVL SELSNNTNNT NNPNNNGVLL KSSSSNSSNY 180 IKGMPFRRLS GCYECRMVVD PVLAFTRDPS LRATICSCPH CAEVFMKPEN LELHQAVRHA 240 VSELGPEDTS KNIVEIIFQS SWLKKQTPVC KIDRILKVHN TQKTINKFEE YRDSIKFKAT 300 RLPKNYGRCI ADGNELLRFH CTTFMCSLGL NGSSNLCNSI PQCNVCSLIK NGFKVVDEGP 360 TGKGILTTAT SGRAHDRADV GLEEQERRAM LVCRVIAGRV KKSPELGGSE EYDSVAGATG 420 VYSNLDELYV FNPKAILPCF VVIYRGF

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAKTTNPRKL TTEIHRTKRS QQKQKQQQPK PQPLPSWVVM RNILTCKHLE VEQQQPQEQT  60
SPTQKNKQQK HAAAVLEENN SKNKNKKMRC SGSLCNNTKV MQRPDSASPE ILQRKSRGGT  120
TTTTAAAAST STTSSSSLEG SSRSIKSPVL SELSNNTNNT NNPNNNGVLL KSSSSNSSNY  180
IKGMPFRRLS GCYECRMVVD PVLAFTRDPS LRATICSCPH CAEVFMKPEN LELHQAVRHA  240
VSELGPEDTS KNIVEIIFQS SWLKKQTPVC KIDRILKVHN TQKTINKFEE YRDSIKFKAT  300
RLPKNYGRCI ADGNELLRFH CTTFMCSLGL NGSSNLCNSI PQCNVCSLIK NGFKVVDEGP  360
TGKGILTTAT SGRAHDRADV GLEEQERRAM LVCRVIAGRV KKSPELGGSE EYDSVAGATG  420
VYSNLDELYV FNPKAILPCF VVIYRGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855718.1	0.0	uncharacterized protein LOC110795050
TrEMBL	A0A0K9QQH8	0.0	A0A0K9QQH8_SPIOL; Uncharacterized protein
STRING	XP_010692561.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-98	C2H2-like zinc finger protein