PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_149970_ueye.t1

Common Name

SOVF_149970

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 371aa MW: 41082.3 Da PI: 6.7984

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_149970_ueye.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.4e-11	30	79	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL + + ++ +K++Ka+iL+ +++ +++L Sp_149970_ueye.t1 30 RKVQKADREKLRRDRLNDHFQELGSAIDPD----RPKNDKATILTDTIQILRDL 79 5677889******************997....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.116	29	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-13	30	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	30	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.73E-10	30	83	No hit	No description
Pfam	PF00010	6.1E-9	30	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-8	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDQTLDRSQS SQLDSRQRPE AEVNDPVAVR KVQKADREKL RRDRLNDHFQ ELGSAIDPDR 60 PKNDKATILT DTIQILRDLT AEVNKLKAES NTLSEESHEL TQEKNELREE KSSLKSDIEN 120 LNAQYQQRLR VVYPWGASVE PSVVMGPPYS YPLPMPYPFF GSQNASTIPS SHPAFMPYPT 180 TPNPNVEQQP IQPAXTARDV ARPASDVAPQ RAMAXRVVYP WGASVEPSVV MGPPYSYPLP 240 MPYPFFGSQN ASTIPSSHPA FMPYPTTPNP NVEQQPIQPA TTYVMSKPDS RSKGLDSGKK 300 ARHLERTDDS SDVATELELK TPGCGRQQNS LCKQSKKKEK SAADGDSSSK VSSCQGPQES 360 SSNSVSHIPK I

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDQTLDRSQS SQLDSRQRPE AEVNDPVAVR KVQKADREKL RRDRLNDHFQ ELGSAIDPDR  60
PKNDKATILT DTIQILRDLT AEVNKLKAES NTLSEESHEL TQEKNELREE KSSLKSDIEN  120
LNAQYQQRLR VVYPWGASVE PSVVMGPPYS YPLPMPYPFF GSQNASTIPS SHPAFMPYPT  180
TPNPNVEQQP IQPAXTARDV ARPASDVAPQ RAMAXRVVYP WGASVEPSVV MGPPYSYPLP  240
MPYPFFGSQN ASTIPSSHPA FMPYPTTPNP NVEQQPIQPA TTYVMSKPDS RSKGLDSGKK  300
ARHLERTDDS SDVATELELK TPGCGRQQNS LCKQSKKKEK SAADGDSSSK VSSCQGPQES  360
SSNSVSHIPK I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839415.1	1e-140	transcription factor bHLH121-like
Swissprot	Q9LT23	1e-63	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0K9QTH1	0.0	A0A0K9QTH1_SPIOL; Uncharacterized protein
STRING	XP_010679934.1	1e-114	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	7e-63	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]