PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_149970_ueye.t1 | ||||||||
Common Name | SOVF_149970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 41082.3 Da PI: 6.7984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.4e-11 | 30 | 79 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL + + ++ +K++Ka+iL+ +++ +++L Sp_149970_ueye.t1 30 RKVQKADREKLRRDRLNDHFQELGSAIDPD----RPKNDKATILTDTIQILRDL 79 5677889********************997....79*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.116 | 29 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-13 | 30 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 30 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.73E-10 | 30 | 83 | No hit | No description |
Pfam | PF00010 | 6.1E-9 | 30 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-8 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDQTLDRSQS SQLDSRQRPE AEVNDPVAVR KVQKADREKL RRDRLNDHFQ ELGSAIDPDR 60 PKNDKATILT DTIQILRDLT AEVNKLKAES NTLSEESHEL TQEKNELREE KSSLKSDIEN 120 LNAQYQQRLR VVYPWGASVE PSVVMGPPYS YPLPMPYPFF GSQNASTIPS SHPAFMPYPT 180 TPNPNVEQQP IQPAXTARDV ARPASDVAPQ RAMAXRVVYP WGASVEPSVV MGPPYSYPLP 240 MPYPFFGSQN ASTIPSSHPA FMPYPTTPNP NVEQQPIQPA TTYVMSKPDS RSKGLDSGKK 300 ARHLERTDDS SDVATELELK TPGCGRQQNS LCKQSKKKEK SAADGDSSSK VSSCQGPQES 360 SSNSVSHIPK I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839415.1 | 1e-140 | transcription factor bHLH121-like | ||||
Swissprot | Q9LT23 | 1e-63 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A0K9QTH1 | 0.0 | A0A0K9QTH1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679934.1 | 1e-114 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 7e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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