PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_148620_skai.t1

Common Name

SOVF_148620

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 384aa MW: 42770.2 Da PI: 6.8199

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_148620_skai.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Sp_148620_skai.t1 43 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	37	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	44	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.938	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MEEMIPNTCS SSIITTPTQN NNNNNNNSKP SSTSLERKVR PQKDQAVNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSPSSL SSPASKKISS 120 HDLVASIGLH QHQEHQHQQQ QHHLFAQNPK IHHPHLHHQG QDLNLGYPPT QQEFRSLSEF 180 MQLPSIETTP KSQMIPNPTG SNNPSSNDDE NNNNGAANHH MSALELLNGL TSSRGLTPFM 240 PMPLSVDHGG VGGGGVYSSG FPLQDYKPSL NFSLVDVGNG YGSLQGEMHH HHQQQQQEQQ 300 EQEQGADHHH HQQQQQQQQQ QASNGRLLFP FEDLKQVSST NSGDHNNNNN NNSDDNNHQE 360 QNGEQEDDTP PGYWSGMLGN GGSW

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MEEMIPNTCS SSIITTPTQN NNNNNNNSKP SSTSLERKVR PQKDQAVNCP RCNSTNTKFC  60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSPSSL SSPASKKISS  120
HDLVASIGLH QHQEHQHQQQ QHHLFAQNPK IHHPHLHHQG QDLNLGYPPT QQEFRSLSEF  180
MQLPSIETTP KSQMIPNPTG SNNPSSNDDE NNNNGAANHH MSALELLNGL TSSRGLTPFM  240
PMPLSVDHGG VGGGGVYSSG FPLQDYKPSL NFSLVDVGNG YGSLQGEMHH HHQQQQQEQQ  300
EQEQGADHHH HQQQQQQQQQ QASNGRLLFP FEDLKQVSST NSGDHNNNNN NNSDDNNHQE  360
QNGEQEDDTP PGYWSGMLGN GGSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857272	6e-51	DQ857272.1 Glycine max Dof28 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857249.1	0.0	dof zinc finger protein DOF4.6
TrEMBL	A0A0K9QRP8	0.0	A0A0K9QRP8_SPIOL; Uncharacterized protein
STRING	XP_010676854.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-36	Dof family protein