PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_145330_hqsi.t1
Common NameSOVF_145330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 316aa    MW: 35042.4 Da    PI: 5.2999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_145330_hqsi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10106152455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +ErrRR+ + + f  L  l+P +     kK +K+++L +A++++k+Lq
  Sp_145330_hqsi.t1 106 DHILAERRRRELLSQLFISLSALVPGL-----KKIDKISVLVEAIKHMKQLQ 152
                        6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.23E-995156No hitNo description
PROSITE profilePS5088813.795102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12106160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-14106161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.864234311IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDQIHNVIEN SCYQQYQESE TMEACFDEQV ADAAVIGEDF RYSVYDTSDD TASPPLDFLV  60
DQFITTPHIS DDNNIKNDVE ESQPPSKEQA LRGVRKRKRQ PGKVQDHILA ERRRRELLSQ  120
LFISLSALVP GLKKIDKISV LVEAIKHMKQ LQEKVKVLEE VAAKRTVVVK KSKVMVDDNN  180
NSSDDNVSSS TVADDSPNAS SGSRGNGGGG GGGGGDNVSS FPEIDVMISG KALLLRVYCE  240
KQKGIVAKLF AEIDKHDLKV TTSSVIPFEN LALDITIVAQ MERGFNHKNV KDFVRTLRKA  300
LRLASYQCNE SSEDEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196114RKRQPGKVQDHILAERRRR
2110115ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846363.10.0transcription factor bHLH18-like
TrEMBLA0A0K9QUE10.0A0A0K9QUE1_SPIOL; Uncharacterized protein
STRINGXP_010683069.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-19bHLH family protein