PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_143930_utat.t1
Common NameSOVF_143930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 384aa    MW: 42909.7 Da    PI: 6.8308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_143930_utat.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14142193155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i+  A++Y+k+L+
  Sp_143930_utat.t1 142 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIVGGAINYVKELE 193
                        79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-13140197No hitNo description
PROSITE profilePS5088815.205141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17141214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-13142207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-11142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MALEAVVFSQ DPLITSCSTS SNNNNNYFGM NYDFSNYYSS KLLLDEDSLK QQHLNVGLYD  60
INENLYDFSD SIILENNVHQ WSHPPHQHQH QQQYVPPCYS SPEDHLYLSP PPPAVDETAV  120
IGGTRRKRRR RSCKDKEEVE HQRMTHIAVE RNRRKQMNEY LAVIRSLMPP SYVQRGDQAS  180
IVGGAINYVK ELEQLLQSME AQKRSHKHPR RHDHHHQLPT SPPEGGGGNI KNINTQKSDS  240
SSDTTPPFAD FFSFPQYSTR SNPNSPGSGS GSMSGFGSVN SVSSSNTNSG VGDIEVTMVE  300
SHANVKILAK KQRKQLVKLI AGFQGLRLNV LHLNVTTVDS FVLYSLSLKV EEGCQLNSVD  360
DIASAANHIL GQIQEEAASD HLLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRKRRRR
2125129RKRRR
3125131RKRRRRS
4142153RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861393.10.0transcription factor bHLH94-like
TrEMBLA0A0K9QUW70.0A0A0K9QUW7_SPIOL; Uncharacterized protein
STRINGXP_010675612.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-79bHLH family protein