PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_143900_sark.t1
Common NameSOVF_143900
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 357aa    MW: 39923.2 Da    PI: 8.9962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_143900_sark.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13295340655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR+ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Sp_143900_sark.t1 295 SIAERMRRNRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKNLQ 340
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-12293342No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14294350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDSYMETQFL SHNHHNNHQQ QQQQQQQQNN NTNNNSSGLL RFRSAPSSLF NEYTHNCGDY  60
ESYERKPPRL NTQNGYSSSA QMAAGEQSIH LPPQYPKQSG ISTCSSSLER SSSMEINLST  120
TAAVTRPGNC GLNLNRQNSS PAGFFNHLNN TQNGYTVMRG LGNLRVANGT SGESSPRAIR  180
LNMSHLPRIP ELGNEIVKES SPDGVKFRNH ETDAGFDSTS PTGYSYVSWN DSTSDASHRL  240
SENGGLTNRP AVLAHHLSLP KTSAEMAAVE KLLHFQDVVP CKVRAKRGCA THPRSIAERM  300
RRNRISERMR KLQELVPNMD KQTNTSDMLD LAVDYIKNLQ DQYKVLSDHR AKCKCIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836627.10.0transcription factor bHLH130-like
RefseqXP_021840406.10.0transcription factor bHLH130-like
TrEMBLA0A0K9QVG30.0A0A0K9QVG3_SPIOL; Uncharacterized protein
STRINGXP_010672727.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-59bHLH family protein