PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_141200_kpwp.t1
Common NameSOVF_141200
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 659aa    MW: 74634 Da    PI: 8.9113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_141200_kpwp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07470511240
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        ++W +eE +ll ++++++++g   +W+ I++++g+gR+ +++
  Sp_141200_kpwp.t1 470 KPWVKEEIDLLRKGIQKFPKGtsrRWEVISEYIGTGRSVEEI 511
                        68***********************************99876 PP
2Myb_DNA-binding24.27.8e-08602648347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                         W+   +  l++a k ++++   +W+++a+ ++ g+t ++ck ++ ++
  Sp_141200_kpwp.t1 602 VWSSVQERALLQALKTFPKEtaqRWERVAAAVP-GKTVNNCKKKLASL 648
                        7********************************.********998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.1E-2196200IPR001623DnaJ domain
SuperFamilySSF465651.57E-1997205IPR001623DnaJ domain
SMARTSM002712.5E-1398173IPR001623DnaJ domain
PROSITE profilePS5007618.89799181IPR001623DnaJ domain
CDDcd062577.06E-1399170IPR001623DnaJ domain
PfamPF002261.8E-1799178IPR001623DnaJ domain
PRINTSPR006252.6E-9104122IPR001623DnaJ domain
PRINTSPR006252.6E-9122137IPR001623DnaJ domain
PRINTSPR006252.6E-9153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.2E-4463511IPR009057Homeodomain-like
PROSITE profilePS500906.295464519IPR017877Myb-like domain
SMARTSM007172.9E-6468521IPR001005SANT/Myb domain
PfamPF002495.2E-6470511IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-6470513IPR009057Homeodomain-like
SMARTSM007171.8E-6599651IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-7601652IPR009057Homeodomain-like
PfamPF002493.4E-6602648IPR001005SANT/Myb domain
CDDcd001679.98E-5603644No hitNo description
Gene3DG3DSA:1.10.10.609.2E-4603644IPR009057Homeodomain-like
PROSITE profilePS500906.516603649IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MMAQQRSHVL LISYTQELKD GKPLYVSSNC LPLKVSKFEP AGHSFHSAAL RLSGYCEEDS  60
DKDDDKSVSN DKETFTPSFE SYSGKSKKKS GGDGKQQQDH YALLGLAHLR YLATEEQIRK  120
SYRDVALKYH PDKQAALLLL EKTEASKQAK KDEIENHFKA IQEAYELLID PQKRRMYDST  180
DEFDDEIPTD CAPQDFFKVF GPAFMRNSRW SVNQPAPSLG DDNSSFEEVE KFYNFWYSYK  240
SWREFPHEDE FDLEQAESRD HKRWMERQNA KLSEKARKEE YTRVRSLVDN AYKRDPRIAK  300
RKEFEKAEKK RKKESKFLAK KLEEEEAARV AEEERLKKEE EDKKAAEAAV QQKKAKEKEK  360
KLVRKERTRL RSLASEVASG SAFDISGDDV ETLCMSLDME RLKNLCNKLE GKAKEEQVKL  420
LKDSLSGKVS EENGPTPAPN PTPKPTGAVK SNGNVASSSV LEKKEKEKEK PWVKEEIDLL  480
RKGIQKFPKG TSRRWEVISE YIGTGRSVEE ILKATKTVLL QKPDSSKAFD SFLEKRKPAV  540
SISSPLSTRD EVPAVNGPVN GPESVPVPEP VADATSSTTT STDSPNVSSS TDIPSASSDP  600
DVWSSVQERA LLQALKTFPK ETAQRWERVA AAVPGKTVNN CKKKLASLKE TFRSKKTTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1919529820123Zuotin
5dje_B5e-1919529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856403.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A0K9QU390.0A0A0K9QU39_SPIOL; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain