PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_140850_fpsh.t1
Common NameSOVF_140850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 472aa    MW: 51700.3 Da    PI: 6.5112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_140850_fpsh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14303348454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++Ns+f  Lr+++P+      ++++Ka+ L  Av+YI++L
  Sp_140850_fpsh.t1 303 NHVEAERQRREKMNSRFYALRSVVPTV-----TRMDKASLLADAVDYINEL 348
                        799***********************8.....7***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-4024209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.314299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18302363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-15302348No hitNo description
PfamPF000101.5E-11303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17303360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-15305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.856405472IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDENMMISSS SSSSLISASP VTSQQKLQFL LQNQQHWWNY AIFWQTCTNK IDNASCSLSL  60
VWGEGHFQGI KTPLPKPKKK PNFSGFDLHV DFDEGMSSMD DVVTTDAEWF YMTSPSKVYP  120
FKQRSSHSGG SGSATSAGTL AKAFTTGSLV WLSGAHSLRF YNCERAKEAH SHGLQTLVCI  180
PVPNGVLELG SAEVIKENWA LIQQAHSLFG PLSNLDMGPM KPEFSIGGNV GGGGGDGVGV  240
SGGVISFYDS GLVGTISTDQ AQPSSMGSFE DYDSDEPMSQ QRAVKKRGRR PGTAREGQAA  300
GVNHVEAERQ RREKMNSRFY ALRSVVPTVT RMDKASLLAD AVDYINELMD KINNLESQLR  360
VVKVPSYNDC NYDNQSVISN NNNNGVVNCR VPLEVEVRVL GNEAMIRVQC EKVNHPAARL  420
MGVLKQLKLE VHHASVSTVE ETMVQDVVIV NVPYELKNDA VIKSAIISRL DQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-20222098192Transcription factor MYC3
4rqw_B5e-20222098192Transcription factor MYC3
4rs9_A5e-20222098192Transcription factor MYC3
4yz6_A5e-20222098192Transcription factor MYC3
5gnj_A1e-20297363268Transcription factor MYC2
5gnj_B1e-20297363268Transcription factor MYC2
5gnj_E1e-20297363268Transcription factor MYC2
5gnj_F1e-20297363268Transcription factor MYC2
5gnj_G1e-20297363268Transcription factor MYC2
5gnj_I1e-20297363268Transcription factor MYC2
5gnj_M1e-20297363268Transcription factor MYC2
5gnj_N1e-20297363268Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845242.10.0transcription factor MYC2-like
TrEMBLA0A0K9QWB90.0A0A0K9QWB9_SPIOL; Uncharacterized protein
STRINGXP_010691764.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-55bHLH family protein