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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sp_139830_zmqh.t1 |
| Common Name | SOVF_139830 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
| Family |
Trihelix |
| Protein Properties |
Length: 145aa MW: 15439.1 Da PI: 7.2895 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_139830_zmqh.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 56.5 | 7.4e-18 | 40 | 119 | 1 | 60 |
trihelix 1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkr 60
+Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkr
Sp_139830_zmqh.t1 40 KWTDNMVRLLIMAVYYIGDEAGNEVvsekkkasggsgggggggsmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKR 119
7**************888887764223346777888899999999*********************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 145 aa
Download sequence Send
to blast |
MTQLTNSDDD EPGCANDQEN SSLDGKRKGG SSISPWQRMK WTDNMVRLLI MAVYYIGDEA 60
GNEVVSEKKK ASGGSGGGGG GGSMQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRE 120
MCAYHNSCGH GAGGISSEAA AASSP
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 71 | 82 | SGGSGGGGGGGS |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G10040.1 | 1e-28 | sequence-specific DNA binding transcription factors |
