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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_139450_ckez.t1 | ||||||||
Common Name | SOVF_139450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 704aa MW: 76793 Da PI: 7.2457 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 521 | 567 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Sp_139450_ckez.t1 521 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 567 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.6E-49 | 48 | 235 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 517 | 566 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.67E-14 | 520 | 571 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-18 | 520 | 582 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-10 | 521 | 567 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-18 | 521 | 583 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-16 | 523 | 572 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MGGGVVWNEE DKAMIASILG TRAFDYLISS PFTAETSLVS HENNENIQNK LSDLVERPNA 60 SNFSWNYGFF WQISRAKSGE VVLSWGDGYC REPREGEESE ATRLLSFRLE DESHQRIRKS 120 VLQKLNTLFG GSDDDNLACR LDRVTDMEMF FLVSMYFLFP RGEGGPGSCF ASKKHVWESD 180 LLRSKSDYCV RSFLAKSAGI QTVILIPTEY GVVELGSVRA IGENHNVLKA LKYAFSSPPV 240 RPKPTPVFPV VIHKIEDDDP PSATAHALAL AQAQAQARAR ADAPTPVTTS APPAPPAPAR 300 VPSPHPAPAP AIVHASAPMP TPAPAPVPGP GSVPATAPAS ASTSATFTNV RLVERGVDGV 360 PKIFGQNLSN TVRPPFREKL AVKRMEDRQW ENYANGNKLS FAGQSPRNGI QGANWANIPG 420 IRHATATELY NNQNTRLQEY VNGIRSEYRL NQFPQQKPGQ MEIDFSGATS RPTVVSQPGS 480 AESEHSDPEV SGRDDKAGPS DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL 540 RAVVPNISKM DKASLLGDAI AYITELQKKL KDMEAEKEKQ NSTSRETEAN SVSVGDADVE 600 GQGQGQGQGQ APDVDVKAMH DEVVVRVSCP LDSHPVARVI RAFKDSEITV VDSKLAAGTD 660 TVFHTFVIKS QSSEQLTKEK VLAAFSHESK TNLQAAQTPS STGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 515 | 577 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 502 | 510 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846662.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 1e-119 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A0K9QUK2 | 0.0 | A0A0K9QUK2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010696336.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-105 | bHLH family protein |
Publications ? help Back to Top | |||
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