PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_139450_ckez.t1
Common NameSOVF_139450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 704aa    MW: 76793 Da    PI: 7.2457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_139450_ckez.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12521567455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sp_139450_ckez.t1 521 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 567
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-4948235IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85517566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-14520571No hitNo description
SuperFamilySSF474592.75E-18520582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10521567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18521583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MGGGVVWNEE DKAMIASILG TRAFDYLISS PFTAETSLVS HENNENIQNK LSDLVERPNA  60
SNFSWNYGFF WQISRAKSGE VVLSWGDGYC REPREGEESE ATRLLSFRLE DESHQRIRKS  120
VLQKLNTLFG GSDDDNLACR LDRVTDMEMF FLVSMYFLFP RGEGGPGSCF ASKKHVWESD  180
LLRSKSDYCV RSFLAKSAGI QTVILIPTEY GVVELGSVRA IGENHNVLKA LKYAFSSPPV  240
RPKPTPVFPV VIHKIEDDDP PSATAHALAL AQAQAQARAR ADAPTPVTTS APPAPPAPAR  300
VPSPHPAPAP AIVHASAPMP TPAPAPVPGP GSVPATAPAS ASTSATFTNV RLVERGVDGV  360
PKIFGQNLSN TVRPPFREKL AVKRMEDRQW ENYANGNKLS FAGQSPRNGI QGANWANIPG  420
IRHATATELY NNQNTRLQEY VNGIRSEYRL NQFPQQKPGQ MEIDFSGATS RPTVVSQPGS  480
AESEHSDPEV SGRDDKAGPS DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  540
RAVVPNISKM DKASLLGDAI AYITELQKKL KDMEAEKEKQ NSTSRETEAN SVSVGDADVE  600
GQGQGQGQGQ APDVDVKAMH DEVVVRVSCP LDSHPVARVI RAFKDSEITV VDSKLAAGTD  660
TVFHTFVIKS QSSEQLTKEK VLAAFSHESK TNLQAAQTPS STGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-29515577264Transcription factor MYC2
5gnj_B6e-29515577264Transcription factor MYC2
5gnj_E6e-29515577264Transcription factor MYC2
5gnj_F6e-29515577264Transcription factor MYC2
5gnj_G6e-29515577264Transcription factor MYC2
5gnj_I6e-29515577264Transcription factor MYC2
5gnj_M6e-29515577264Transcription factor MYC2
5gnj_N6e-29515577264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502510RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846662.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-119MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0K9QUK20.0A0A0K9QUK2_SPIOL; Uncharacterized protein
STRINGXP_010696336.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-105bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]