PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_139300_cpzh.t2

Common Name

SOVF_139300

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB

Protein Properties

Length: 1555aa MW: 167863 Da PI: 6.1114

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_139300_cpzh.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.5e-09	749	790	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia+ + ++t +c+++++k Sp_139300_cpzh.t2 749 PWTFEEKEIFMDKLATHGKD-FRKIASFLD-HKTTADCVEFYYK 790 8***************99.*****.*********98 PP
2	Myb_DNA-binding	25.7	2.6e-08	961	1001	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT +E l+v+a+ +G++ + I+r++ ++++ qck ++ Sp_139300_cpzh.t2 961 DWTDDEKSLFVQAFSSHGND-FLMISRCVR-TKSRDQCKVFFS 1001 5*****************.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-14	733	795	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.24	745	796	IPR017884	SANT domain
SMART	SM00717	7.9E-9	746	794	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	747	790	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	749	790	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.065	957	1008	IPR017884	SANT domain
SMART	SM00717	3.0E-6	958	1006	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-9	959	1008	IPR009057	Homeodomain-like
Pfam	PF00249	8.3E-6	961	1001	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-5	962	1000	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1555 aa Download sequence Send to blast
MADPGTTITT TITTTTTISP LVGGFLPPSF AALLGGWHIY PEDHGYSTPR SGDRFMDDSN 60 MFRQSGMRGD GRYGRFYREG RPFGQRDWRG HSWEANHHHS GPANGVGRPH SVNDQRSVGD 120 SPVRASHPHS DPRDQFHTKD QIDKMSDANG SGMGQRVDRD SLVGSLDWKP LKWSRSGSLT 180 SRGSGFSHSS SSKSIGGESS DVKGDLPPKN VSPVQSPSGD AVACGPSVTP EETSSRKKPR 240 LGWGEGLAKY EKKKVDGPED NVNNDDNAEP SHSNPSNLIV KSPKITGFSD CSSPATPSSF 300 ACSSSPGLED RTYAKTVNAG GDTSNFSVTS MPIPESHLEE SHFRLEKLEL KSISNLGSLL 360 TELLQADDQC SMDSGFMRSS AFNKLLLWKG EISKTLELTE TEIDSLENEL TTLKSGNARS 420 FHCPASSNSG PADYRDGPID GQTVFPRPHP LEVVSNGDVI LEDGLPCDNA GGVQAESKDE 480 DIDSPGTATS KFVEPPIQKP VSCDVCKNPS YGETGFVEST QSTADVGTSC QGHDRSLVQL 540 NNSTAIGIEH PGVCDYKEGN ICDTILASNK EFANRAAEGI LKLLPNCDYS IEANRVSCMS 600 ADSTIKEKFL RRKRALRFKE RVISLKYRAF HHLWKEDLRL LSLRSHRTKP LKKPDLSSRT 660 LQIGSQKHRS SIRARFTSPA GSLSLVPTTE IINFTSKLLS DSNAKVYRSG LKMPAMILDE 720 KEKMSKFVSS NGLIEDPCAV EEERTMINPW TFEEKEIFMD KLATHGKDFR KIASFLDHKT 780 TADCVEFYYK NHKSESFEKI KKLEVKKIGK PLSADTYLVT SGKKWSREMN AASLDILGAA 840 SVIAAEADQA LETSKLLSGK SSKTKSRGPA VIIEASNSFY GAEDERETAA ADVLAGICGS 900 LSSEAMSSCI TSSVDPGEGN QDWKHQKVGS SIRRPLTPEV TQSVDDGTCS DESCGEMDPT 960 DWTDDEKSLF VQAFSSHGND FLMISRCVRT KSRDQCKVFF SKARKCLGLD TLPTGSGSRG 1020 THASNDTNEG GSDTEDAGIV ETGSIVCSDK SGSRIDEDLL HVNQDVSKPE VTVAESNILE 1080 ESCGPGQLDH KDAGLELAGV IDPIARGRVV DVLVKDSATV VNTQRSDVQL MIQDDKVEVN 1140 PAIYRSGAEV APHDSGAAKD VESSGISSAP AEFASPGDGL LKPSTAGDNV HHLQSGSSVM 1200 NRGGELCRDL EGFPLDLSIK ADLHDVITHT VGAESIEHSF QDSFLRKCSR SISHNSVAEL 1260 PLLEQSKDEF GSSCSSKADK PCRNGNVKLF GKILSKSSSL DKPTCNTVLN DEKAKHHSSS 1320 GGKFDVKLAV NQDLKGNSTC FAEDHNSFMG LENVPIRSYG FWDGTKIQTG FPTLPDSALL 1380 LAKYPSAFSN YTISSPKPEK QTVAAVAVSS GNECNMNGAC VFSPREFSSS NGGSVIDYNN 1440 GSRKQEGLQH PFRLEMKQRS KDVVVFPEVQ RNGFEALQQQ GNGIVKLNVV QGGDNIIGGS 1500 CSGISDPVAA LKLHYATQQY GNGKNGNGNG NGHAVNGIVR EEPWRSQGGG GDVGR

Sequence ? help Back to Top

Protein Sequence Length: 1555 aa Download sequence Send to blast

MADPGTTITT TITTTTTISP LVGGFLPPSF AALLGGWHIY PEDHGYSTPR SGDRFMDDSN  60
MFRQSGMRGD GRYGRFYREG RPFGQRDWRG HSWEANHHHS GPANGVGRPH SVNDQRSVGD  120
SPVRASHPHS DPRDQFHTKD QIDKMSDANG SGMGQRVDRD SLVGSLDWKP LKWSRSGSLT  180
SRGSGFSHSS SSKSIGGESS DVKGDLPPKN VSPVQSPSGD AVACGPSVTP EETSSRKKPR  240
LGWGEGLAKY EKKKVDGPED NVNNDDNAEP SHSNPSNLIV KSPKITGFSD CSSPATPSSF  300
ACSSSPGLED RTYAKTVNAG GDTSNFSVTS MPIPESHLEE SHFRLEKLEL KSISNLGSLL  360
TELLQADDQC SMDSGFMRSS AFNKLLLWKG EISKTLELTE TEIDSLENEL TTLKSGNARS  420
FHCPASSNSG PADYRDGPID GQTVFPRPHP LEVVSNGDVI LEDGLPCDNA GGVQAESKDE  480
DIDSPGTATS KFVEPPIQKP VSCDVCKNPS YGETGFVEST QSTADVGTSC QGHDRSLVQL  540
NNSTAIGIEH PGVCDYKEGN ICDTILASNK EFANRAAEGI LKLLPNCDYS IEANRVSCMS  600
ADSTIKEKFL RRKRALRFKE RVISLKYRAF HHLWKEDLRL LSLRSHRTKP LKKPDLSSRT  660
LQIGSQKHRS SIRARFTSPA GSLSLVPTTE IINFTSKLLS DSNAKVYRSG LKMPAMILDE  720
KEKMSKFVSS NGLIEDPCAV EEERTMINPW TFEEKEIFMD KLATHGKDFR KIASFLDHKT  780
TADCVEFYYK NHKSESFEKI KKLEVKKIGK PLSADTYLVT SGKKWSREMN AASLDILGAA  840
SVIAAEADQA LETSKLLSGK SSKTKSRGPA VIIEASNSFY GAEDERETAA ADVLAGICGS  900
LSSEAMSSCI TSSVDPGEGN QDWKHQKVGS SIRRPLTPEV TQSVDDGTCS DESCGEMDPT  960
DWTDDEKSLF VQAFSSHGND FLMISRCVRT KSRDQCKVFF SKARKCLGLD TLPTGSGSRG  1020
THASNDTNEG GSDTEDAGIV ETGSIVCSDK SGSRIDEDLL HVNQDVSKPE VTVAESNILE  1080
ESCGPGQLDH KDAGLELAGV IDPIARGRVV DVLVKDSATV VNTQRSDVQL MIQDDKVEVN  1140
PAIYRSGAEV APHDSGAAKD VESSGISSAP AEFASPGDGL LKPSTAGDNV HHLQSGSSVM  1200
NRGGELCRDL EGFPLDLSIK ADLHDVITHT VGAESIEHSF QDSFLRKCSR SISHNSVAEL  1260
PLLEQSKDEF GSSCSSKADK PCRNGNVKLF GKILSKSSSL DKPTCNTVLN DEKAKHHSSS  1320
GGKFDVKLAV NQDLKGNSTC FAEDHNSFMG LENVPIRSYG FWDGTKIQTG FPTLPDSALL  1380
LAKYPSAFSN YTISSPKPEK QTVAAVAVSS GNECNMNGAC VFSPREFSSS NGGSVIDYNN  1440
GSRKQEGLQH PFRLEMKQRS KDVVVFPEVQ RNGFEALQQQ GNGIVKLNVV QGGDNIIGGS  1500
CSGISDPVAA LKLHYATQQY GNGKNGNGNG NGHAVNGIVR EEPWRSQGGG GDVGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-18	713	798	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-18	713	798	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864416.1	0.0	uncharacterized protein LOC110803228 isoform X2
TrEMBL	A0A0K9QUP6	0.0	A0A0K9QUP6_SPIOL; Uncharacterized protein
STRING	XP_010669645.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-147	MYB family protein