PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_138170_ozde.t1
Common NameSOVF_138170
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 973aa    MW: 108681 Da    PI: 5.7961
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_138170_ozde.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-22315417198
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f kvl+psdv+k +++v+pk fa+++    +++k +++ l ++d++g+ W++ ++y+   ++y+l++GW++Fv++++L +gD v F++  g 
  Sp_138170_ozde.t1 315 FHKVLIPSDVGKMKCFVIPKVFADKYfpkiSSIK-NHQLLGFKDLTGKLWTFLYTYSYDYQSYILAEGWSRFVEEKQLAAGDAVYFYHGvGG 405
                        89**************************984444.4569************************************************76544 PP

                        .SEE..EEEEE- CS
                 B3  88 .sefelvvkvfr 98 
                         ++ ++++++ r
  Sp_138170_ozde.t1 406 eDKYKFFIHWNR 417
                        466666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-24310421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-22313418IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-19314414No hitNo description
SMARTSM010192.6E-10315419IPR003340B3 DNA binding domain
PfamPF023628.8E-20315418IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056315419IPR003340B3 DNA binding domain
SuperFamilySSF520581.13E-42545702IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.8E-20547705IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-9728905IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.13E-42732941IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MDSSGAGKFP EKNRTNFPWE MINSSSSSSS DDEVSSDVLP ERSSDCRSTL TFATAFPGVV  60
AESSVSIQTP QRNWVQLLKS EEVLSERSSV SIDNLKANWN HTTEPSVAES SVSVQNPLRS  120
SSVVMSARSS GSRSTSTSIV NNPKATPYFP VAESSGVSQM SIENTQRSGY SPGHDSWDEI  180
TQGFSTMENE YAFIEDAPTA IPTRSPPLPP VTPQLSPLCF ATVSPPQFPM SSAPVSPESN  240
VGCVADPFAQ ADTSIEEVLA AAEELMMHLK VSGSENDFVA AGITERLMLT TRRAKKLLHF  300
GGCSDSLAVR KDLMFHKVLI PSDVGKMKCF VIPKVFADKY FPKISSIKNH QLLGFKDLTG  360
KLWTFLYTYS YDYQSYILAE GWSRFVEEKQ LAAGDAVYFY HGVGGEDKYK FFIHWNRRDD  420
AAANKDLTTI ADDFTANALP YCALFPHSYE FDKDTIIQLW MAHGVFVNEP MEKIAGLIFE  480
KCVIGGYLLF CQTNLVTGKA MYKSGRVGSL ISSVSDKIVH IEGNSNLNDV SVEVSHMSIR  540
CYRQENSCNL QELRRFKQLR TLMFLHGRES SFKQVPRDMF LSMKLLHVLD LSQTHLMELP  600
SSIGNMKCLR YLNLSETLIT RLPEAVDCLE NLQTLKLRGC SNLSSLPKGM RKLVNLRHLD  660
LDVRRQLRLM PPWLGNLFNI QTLSAFLVGL GEECNIRQLK NMNNLSGNFC ISRLENVLTE  720
DEAAEAHLCY KPQLKKLELQ WSDTQDDVLG NREVVSSLKP NTNLEELHIS CYGGFELPRW  780
ICDPAFTKLV SVTLFKCENC SVLPSLGLLL SLRFLNILDF YKLEVIDHNF SGGVGIQGFN  840
AFPKLKKLAI ENMLSLEEWT GMGKSDFPCL VTLTIKNCPK LSSLCTLSYL HSLKNLEISH  900
CDTLESWTDG RLPASVETLI IEDCPMICVE SLQNGGPDWH KVAHVQNVWV DNQEISFGGS  960
SLIENPFTDY FVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-253114184113B3 domain-containing transcription factor NGA1
5os9_B4e-253114184113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837758.10.0uncharacterized protein LOC110777457 isoform X4
TrEMBLA0A0K9QX950.0A0A0K9QX95_SPIOL; Uncharacterized protein
STRINGXP_010672196.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-29B3 family protein