PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_137700_zxdt.t1
Common NameSOVF_137700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CPP
Protein Properties Length: 752aa    MW: 83561.5 Da    PI: 6.8423
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_137700_zxdt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.87e-16475513240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk 
  Sp_137700_zxdt.t1 475 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQDCFNKP 513
                        689**********************************96 PP
2TCR51.22.5e-16559598140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Sp_137700_zxdt.t1 559 RHKRGCNCKKSGCLKKYCECYQGGVGCSLSCRCEGCKNTF 598
                        589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-17474515IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.392475599IPR005172CRC domain
PfamPF036382.5E-11477512IPR005172CRC domain
SMARTSM011144.9E-18559600IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-12561597IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MDTPDKSTAT QPSPSSFLSK FEDSPVFNYI STLSPIKPFS LGHSTQPLHL NFSSPQAFKT  60
PPTSYLREPK FTRASHVTEV SKNNFSYNGS EGKNAETSTA IEPADLQTEE VDKTDRNVTV  120
STTDESSKLV SEIPRPLKYE CDSPENNGVH CDAVKTHREF IVAGTELFLE KVNQDNSKEE  180
DCSFGKEMGM QAIRMAQNKE ACEWDEFVCE ASDILNGHSP TKENYHDDPE DSIANSGMLS  240
FVATVLQPPN EQKTDVACPD LSEHHHLEVP MNKPAENRNT NERSQMSAND TRTVLDEEIV  300
HHFRTTIDDK QQETTRRRCL VYEMSGSHYR KLLASSPNKA AGSSSFSNNK SLMASRPGGN  360
KFSSALPGIG LHLNALAAAA KDKIIVKRQT LNCTRQLISS PCTTSSFDYL ISDTKSHTTQ  420
MAPVVVKTEA GEQKDEVQVS GDVSENSVVG EGIEFSQSSP KKKRRKAENA EETDSCKRCN  480
CKRSKCLKLY CECFAAGLYC VEPCNCQDCF NKPVHEEIVL ETRRQIESRN PLAFAPKVIR  540
CSGTPNSLEE LNKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSLSCR CEGCKNTFGR  600
KEGSERIVFE ETRFFQRNAS DISSHSDVPI TDKENHDQAT SEPSMNARQP FNFGGMAPRF  660
PTLPNGHFPQ SCTSQNIDNS DKIKIAVPED EALKGDYLLP TTYVKSASPN CKRISPHFET  720
SPGWKSCRKL ILRSLPAFTV DKESKQLLEK LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1647759612120Protein lin-54 homolog
5fd3_B3e-1647759612120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460464KKKRR
2460465KKKRRK
3461465KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866889.10.0CRC domain-containing protein TSO1-like isoform X1
TrEMBLA0A0K9QWU50.0A0A0K9QWU5_SPIOL; Uncharacterized protein
STRINGXP_010675092.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-90Tesmin/TSO1-like CXC domain-containing protein