PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_137650_ogcn.t1
Common NameSOVF_137650
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 309aa    MW: 34595.3 Da    PI: 7.7241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_137650_ogcn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12159205455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k++q
  Sp_137650_ogcn.t1 159 DHILAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYVKQMQ 205
                        6899***********************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16158226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-11160209No hitNo description
SMARTSM003532.2E-14161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNNDLSFIHH ELQVNSFEDL FSPSPPLPYH GSFDQAAEMN YEAQIGCKRS ALQTDLHHHN  60
PVLVENPKKQ LKTNNWNSYQ QMNNHVLNSQ EYHDSNSTML SFSNSSNSST QTSTLITPKQ  120
ETVVNQAVSV AKQSCIIESR PQLAAKKSAS IPPQQSSMDH ILAERKRREK LSQRFIALSA  180
IIPGLKKMDK ASVLGDAIKY VKQMQEKVKK LEEDAKKKTV ESAVLVKRCY VPAEDNHHFS  240
TADDPFPEME VRFSDKDVLI SIHCEKKKGL IEKVISQIEE LHLNVISSSS LAFGGSALAV  300
TITAQVINI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15154212361Transcription factor MYC2
5gnj_B3e-15154212361Transcription factor MYC2
5gnj_E3e-15154212361Transcription factor MYC2
5gnj_F3e-15154212361Transcription factor MYC2
5gnj_G3e-15154212361Transcription factor MYC2
5gnj_I3e-15154212361Transcription factor MYC2
5gnj_M3e-15154212361Transcription factor MYC2
5gnj_N3e-15154212361Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848311.10.0transcription factor bHLH18-like
TrEMBLA0A0K9QV610.0A0A0K9QV61_SPIOL; Uncharacterized protein
STRINGXP_010691492.11e-102(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein