PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_137410_nzzi.t1
Common NameSOVF_137410
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 337aa    MW: 37990.2 Da    PI: 7.7613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_137410_nzzi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018214236123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC  C+k+F++   L  H  +H
  Sp_137410_nzzi.t1 214 YKCDTCNKVFKSYQALGGHRASH 236
                        9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.99426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619431IPR007087Zinc finger, C2H2
PfamPF139126.4E-6527IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-9212236No hitNo description
PfamPF139125.3E-13213239IPR007087Zinc finger, C2H2
SMARTSM003550.012214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97214241IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-9264291No hitNo description
PfamPF139121.0E-12268291IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162269291IPR007087Zinc finger, C2H2
SMARTSM003550.34269291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MERQRCKLCY RKFANGRALG GHMRSHMMNL PIPPKPDPPR PLPPPPKKLQ TPSCETVSET  60
ESPSSPPFSS SSSSGSERDA VAEPTGSSSL ITLQDRESET ESFKKNPTRK RRSKRIISKP  120
SSSTTSSEYH FQRRHYRHLN EYDPDDFIIN NNNNNSAEEA AAVEAPGSSV SEVTSDEDLA  180
FCLMMMSRDK WNDDCDIGTT RTTTTTRTSN KKRYKCDTCN KVFKSYQALG GHRASHKKQR  240
LRDDGNDRII SYLYEEDERL EEELEKKVHE CPVCYRVFAS GQALGGHKRS HVLANNNTNS  300
PKKSKKMVIT DNESLIDLNL PAPVDDDDDS AVSDVHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112TRKRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849300.10.0zinc finger protein ZAT9-like
TrEMBLA0A0K9QXG50.0A0A0K9QXG5_SPIOL; Uncharacterized protein
STRINGXP_010692450.13e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-35C2H2-like zinc finger protein