PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_136060_cqxj.t2

Common Name

SOVF_136060

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 371aa MW: 41031 Da PI: 8.4035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_136060_cqxj.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	56	117	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k+++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sp_136060_cqxj.t2 56 KDQNVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSLRNVPVGGGSRKNKRSSS 117 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	37	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-33	57	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.04	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDAAQWPQHQ QIADFSRPME EIAIPNNPNN NNNNPRPITP IVGVGIGEQR KARPQKDQNV 60 NCPRCNSTNT KFCYYNNYSL TQPRYFCKTC RRYWTQGGSL RNVPVGGGSR KNKRSSSSNP 120 SINTTNNNNN NNSTNSSIPN KLIPDLNPPS NNNSLSHLIT SSQNPKFLEG HDLNLAFPMQ 180 GLFHPTNNEN HEPINIMNTN NNNNNISTNT TTNTCSTTTS STPISALELL RTGIASRGSM 240 NPYVPMPMQM PMPDSGTLYP SGFPNLQEFK PNMNNVFSSP PPPPPPAGDH HNNMVGSGGG 300 DNNVGSHARL LFPFADMNKL ASSTHHHHQE MDDQSKEGTN DHHHQHNNHH HHHNQGPTNG 360 YWSGMLGGGT W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDAAQWPQHQ QIADFSRPME EIAIPNNPNN NNNNPRPITP IVGVGIGEQR KARPQKDQNV  60
NCPRCNSTNT KFCYYNNYSL TQPRYFCKTC RRYWTQGGSL RNVPVGGGSR KNKRSSSSNP  120
SINTTNNNNN NNSTNSSIPN KLIPDLNPPS NNNSLSHLIT SSQNPKFLEG HDLNLAFPMQ  180
GLFHPTNNEN HEPINIMNTN NNNNNISTNT TTNTCSTTTS STPISALELL RTGIASRGSM  240
NPYVPMPMQM PMPDSGTLYP SGFPNLQEFK PNMNNVFSSP PPPPPPAGDH HNNMVGSGGG  300
DNNVGSHARL LFPFADMNKL ASSTHHHHQE MDDQSKEGTN DHHHQHNNHH HHHNQGPTNG  360
YWSGMLGGGT W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846786.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A0K9QVQ9	0.0	A0A0K9QVQ9_SPIOL; Uncharacterized protein
STRING	XP_010694741.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-39	Dof family protein