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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_136060_cqxj.t1 | ||||||||
Common Name | SOVF_136060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | Dof | ||||||||
Protein Properties | Length: 353aa MW: 38922.7 Da PI: 8.5996 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.2e-39 | 38 | 99 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k+++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sp_136060_cqxj.t1 38 KDQNVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSLRNVPVGGGSRKNKRSSS 99 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 19 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-33 | 39 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.04 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEIAIPNNP NNNNNNPRPI TPIVGVGIGE QRKARPQKDQ NVNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTQGG SLRNVPVGGG SRKNKRSSSS NPSINTTNNN NNNNSTNSSI 120 PNKLIPDLNP PSNNNSLSHL ITSSQNPKFL EGHDLNLAFP MQGLFHPTNN ENHEPINIMN 180 TNNNNNNIST NTTTNTCSTT TSSTPISALE LLRTGIASRG SMNPYVPMPM QMPMPDSGTL 240 YPSGFPNLQE FKPNMNNVFS SPPPPPPPAG DHHNNMVGSG GGDNNVGSHA RLLFPFADMN 300 KLASSTHHHH QEMDDQSKEG TNDHHHQHNN HHHHHNQGPT NGYWSGMLGG GTW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846786.1 | 1e-172 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_021846790.1 | 1e-172 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Refseq | XP_021846792.1 | 1e-172 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A0K9QVQ9 | 0.0 | A0A0K9QVQ9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694741.1 | 1e-118 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 6e-36 | Dof family protein |