PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_134740_qmsq.t1
Common NameSOVF_134740
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 843aa    MW: 92325.7 Da    PI: 5.1438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_134740_qmsq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.2e-0690115226
                        -S---SGGGGTS.--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHg 26 
                        kt+lC++f+ t   C++G+ C+FaH 
  Sp_134740_qmsq.t1  90 KTSLCSYFRSTSgSCSHGEGCRFAHN 115
                        89******87766************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1285122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-686121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4688117IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-490115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3305.0E-4173235IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005902.62E-4173235No hitNo description
PROSITE profilePS5168750.476292843IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533354.7E-51294320IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.7E-51352455IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.7E-51482493IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.7E-51526647IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.9E-66543647IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.9E-10591653IPR025714Methyltransferase domain
CDDcd024404.15E-6593647No hitNo description
Gene3DG3DSA:3.40.50.1503.9E-66723783IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.6E-7731779IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533354.7E-51731783IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300739771IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.9E-66818843IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.7E-51827843IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MATSESPEPK TLATDTLNPT TATPENHPVT AAETSVKPSE QPNSNNPPPP SSPPKSPETT  60
AKRKREEEEQ QVEDDDAKKT KPSSEHPLHK TSLCSYFRST SGSCSHGEGC RFAHNEEELR  120
PRPDGSWDPT SQRAKKGDAE EEEGVDEEEE KVVMMTEVLA DSSDPQLSKC LIHLPRKWSS  180
DQLKTYLDEQ GVVFKSAKKK KGMSVGFLTF EAAEQVNSAT ELLGGKSIGK EKLKIGDVIP  240
RAYDEKIKSA EKRYQNGIAG VADETEANSA SNEIENGEVN GSASRGKSVR DAVTPLAHLP  300
YAEQLEQKKN SLTQILKRLT RNARKACPKD LPLPKWVVNS REIGGLPCKL EGIIESPQIN  360
GYRNKCEFSV GLSVQGKPTV GFMLGNFREG VTAVEEPTNC PNVSRIACNY ASVFQEFLRD  420
SALPIWNRFN NTGFWRQLTV REGQNPQKDV ELQVQDPEAC ISEVMLIVQV STEGCDDGLV  480
NSELEKLTQA FVEGAASTSP PSPLTAVALQ DHKGISNAAP ADTPLRSLPI LTSHSEMEVV  540
MDIKEPRIHD YIGNLRFSIS PTAFFQVNTR AAEKLYSLAG DWAGLNPDTL LFDVCCGTGT  600
IGLTLANRVG MVVGIEMNAS AVSDAQRNAE INGITNCKFI CSKAEDVMGS LLTEYLDDSQ  660
KQDDTLNPSD NDEKQNCAAE NQTTSVNNEA DPKDCLNEMN VDTDHACDSI KGEQDLQINN  720
TKDGSAPKKH FKNVVAIVDP PRSGLHPVVL KALRTHPLLK RLVYISCNPE TLVANAIELC  780
TPSSETNEKG RKGQGWRNMS NAGLARHRLK SMPKSEPFQP VKAMAVDLFP HTPHCELVML  840
LER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5xj2_A6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5xj2_B6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5xj2_C6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5xj2_D6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5zq0_A6e-19549654263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5zq8_A6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5zq8_B6e-19549654262371Uncharacterized RNA methyltransferase SP_1029
5zth_A6e-19549654263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853188.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0K9QW580.0A0A0K9QW58_SPIOL; Uncharacterized protein
STRINGXP_010689563.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]