PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_134450_jzds.t1

Common Name

SOVF_134450

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 378aa MW: 42399.6 Da PI: 7.7343

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_134450_jzds.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r nL+ H+r H Sp_134450_jzds.t1 206 HYCQVCGRGFKREANLRMHMRAH 228 68*******************99 PP
2	zf-C2H2	10.6	0.0018	318	341	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ C+ k Fs s+Lk+H + + Sp_134450_jzds.t1 318 FVCKRCNmKEFSVLSDLKTHEKHC 341 89******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.85E-5	205	231	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	206	228	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.926	206	233	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0013	206	228	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2
SMART	SM00355	73	280	313	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	36	318	340	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MIQGEVLCFT NGGDAAEGGN GDLSNLYNNG VLLESSYDGV VVAGGSSSEE NLSIRSLLYS 60 ISMLKEKVGD VESFVSIYLN QQENHYYDHS HQTTVDQQLT SSMAFSSMAN LIQEIVHTAS 120 FMMLSCEQMA LSGTTTTTTT QIGNINNELH TMQKANNQEV FNNGDSFYHH HASKNTNQES 180 PSSLSVEAAY DLVEVDAADL LARYTHYCQV CGRGFKREAN LRMHMRAHGD KYNKLSLMSN 240 NNINNNNNSL KQNKNDNEVE HNNNTRTKAV AVAVAPPRKY SCPQKGCRWN KNHVKFQPLK 300 SMVCVRNHYK RSHCPKMFVC KRCNMKEFSV LSDLKTHEKH CGDNVKKLYC SCGTSFTNNH 360 KLMDHVALFL GHTPLIYP

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MIQGEVLCFT NGGDAAEGGN GDLSNLYNNG VLLESSYDGV VVAGGSSSEE NLSIRSLLYS  60
ISMLKEKVGD VESFVSIYLN QQENHYYDHS HQTTVDQQLT SSMAFSSMAN LIQEIVHTAS  120
FMMLSCEQMA LSGTTTTTTT QIGNINNELH TMQKANNQEV FNNGDSFYHH HASKNTNQES  180
PSSLSVEAAY DLVEVDAADL LARYTHYCQV CGRGFKREAN LRMHMRAHGD KYNKLSLMSN  240
NNINNNNNSL KQNKNDNEVE HNNNTRTKAV AVAVAPPRKY SCPQKGCRWN KNHVKFQPLK  300
SMVCVRNHYK RSHCPKMFVC KRCNMKEFSV LSDLKTHEKH CGDNVKKLYC SCGTSFTNNH  360
KLMDHVALFL GHTPLIYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848287.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
Refseq	XP_021848288.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBL	A0A0K9QW82	0.0	A0A0K9QW82_SPIOL; Uncharacterized protein
STRING	XP_010667295.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	5e-82	C2H2 family protein