PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_133470_sach.t1
Common NameSOVF_133470
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 449aa    MW: 48737.1 Da    PI: 7.954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_133470_sach.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09125146426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C+++ + G C+yGd+CkF H+
  Sp_133470_sach.t1 125 RVCNYWVQ-GKCSYGDNCKFLHS 146
                        78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0233156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9813157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-8121146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615121148IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7125144IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.56E-46144199IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.8E-44145438IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.5E-5152190IPR001680WD40 repeat
PfamPF004005.0E-5154190IPR001680WD40 repeat
PROSITE profilePS5029419.934159360IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.812159199IPR001680WD40 repeat
PRINTSPR003209.1E-7177191IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780177191IPR019775WD40 repeat, conserved site
SMARTSM003206230267IPR001680WD40 repeat
SuperFamilySSF509781.56E-46237441IPR017986WD40-repeat-containing domain
SMARTSM003200.0094274311IPR001680WD40 repeat
PfamPF004000.015278311IPR001680WD40 repeat
PROSITE profilePS5008212.079281320IPR001680WD40 repeat
PRINTSPR003209.1E-7298312IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780298312IPR019775WD40 repeat, conserved site
SMARTSM003200.0015314351IPR001680WD40 repeat
PfamPF004000.021316350IPR001680WD40 repeat
PRINTSPR003209.1E-7338352IPR020472G-protein beta WD-40 repeat
SMARTSM0032034355398IPR001680WD40 repeat
SMARTSM003201.5401438IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDFDSNGGNK RVFNRLGNKP QPHHYPNQNQ NQNQKVCYHW QAGRCTRNPC AFLHRELPPP  60
PLPTHASSSS SSSFNGSSKR AHGGGLGGGG PRNDGFSSRK NPNFNNTWGR VGGGGGGVPP  120
KKMERVCNYW VQGKCSYGDN CKFLHSWSIG GSFSLLTTLE GHQKVVTGIT LPSGDKLYTG  180
SKDENVRIWD CASGQCVSAV PLGGEIGCMI SEGPWVFIGL PNMVKALNIE TVTDMSLSGP  240
VGQVYSLVVG NDLLFAGTED GSILAWKFNP ATNCFEPAAS LTGHTRAVVT MFVGANRLYS  300
GSMDNSIRVW NIETLQCIQI LTDHKSVVMS VLCWEQFLLS ASLDNTIKVW AATPSGNLEV  360
TYTHTEENGI LTLCGMFDAE AKPVLLCSTN DNFVRIYDLP SFMERGKIIS KQEIRAIQAG  420
PSGLFFTGDG NGQVRVWNWI AEPKTATAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-201564388323Tako8
6g6n_A5e-201564388323Tako8
6g6n_B5e-201564388323Tako8
6g6n_C5e-201564388323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842300.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0K9QWH90.0A0A0K9QWH9_SPIOL; Uncharacterized protein
STRINGXP_010693461.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein