PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_132960_ffho.t1
Common NameSOVF_132960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 420aa    MW: 48272.1 Da    PI: 5.5097
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_132960_ffho.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-07649340
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       +r C+ + +k+++++C  ++ +lC++C  + H+       H++v
  Sp_132960_ffho.t1  6 ARACDCCIRKRARWYCPADDAFLCQTCDGTVHSAnslarrHERV 49
                       578*****************************657788888876 PP
2CCT691.2e-23369412144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Sp_132960_ffho.t1 369 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 412
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-7451IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324451IPR000315B-box-type zinc finger
PfamPF006431.5E-5749IPR000315B-box-type zinc finger
CDDcd000211.49E-6751No hitNo description
PROSITE profilePS5101716.122369411IPR010402CCT domain
PfamPF062035.6E-18369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSGKTARACD CCIRKRARWY CPADDAFLCQ TCDGTVHSAN SLARRHERVR LKTASLKRAV  60
EDLQRLDLPS WHRGLTRKPR TPRQGKHQSK SQERNPLHVI VPELGMEDTT SSQDDESEEH  120
LLYRVPIYDP FLTHHFGSSP TIDDIRPLEL EEVNNMFSNS KPSPDDYMPS DMDLEDFAAD  180
VETLLGKGLD DELYGIQDLG LLDSSPSIIN INDNDICLNV KEEDELCDEG GMIQADSNNV  240
VIRESFELDF DYDDHDFGTT WEDEQEHKRI IMMEPCSIMV NESCKIEEND ETEKSKRRNI  300
LLRLDYEAIS ASWASQGSPW LNGQRPVINP DDCWPQCMGT CALQGRHHQQ LYGDHQMGGN  360
GRMIGDGGRE ARVTRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSFAAAFPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379395RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859602.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A0K9QYU20.0A0A0K9QYU2_SPIOL; Uncharacterized protein
STRINGXP_010667660.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.19e-71B-box type zinc finger protein with CCT domain