PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Sp_132620_gfwn.t1

Common Name

SOVF_132620

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 297aa MW: 33183.6 Da PI: 7.1475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_132620_gfwn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.5	1.4e-32	6	78	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+wyf+ +rd+kyatg r+nrat+sgyWkatgkd++v++ +g+lvg++ktLvfy+grapkg+ktdWvmhe+r+ Sp_132620_gfwn.t1 6 GKDWYFYNQRDRKYATGLRTNRATASGYWKATGKDRPVVR-RGSLVGMRKTLVFYQGRAPKGKKTDWVMHEFRV 78 689**********************************9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.672	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-37	4	105	IPR003441	NAC domain
Pfam	PF02365	2.4E-14	8	78	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
TGCVGGKDWY FYNQRDRKYA TGLRTNRATA SGYWKATGKD RPVVRRGSLV GMRKTLVFYQ 60 GRAPKGKKTD WVMHEFRVEG PFGPPKLNPT SKQEDWVLCK VFYKNSKSEG GSKSGGELEN 120 DSNSMEEETS SSSCLPPLME SYITFNQTQT TTTTTTNPDN SNNNNAGYHQ QVPCFSITSS 180 SANLQQIHPN NNNNNNNNNY PAILYQNNDH MLYPNQNDQQ TCTTIMAHPD LDESAANPLG 240 CDRKVLEAVL TQLTKMETDH PIINFNNASS SLGEVASSET YNLSSQVALP PHIWNNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	2	109	66	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	2	109	66	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	2	109	66	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	2	109	66	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-32	2	109	69	173	NAC domain-containing protein 19
3swm_B	3e-32	2	109	69	173	NAC domain-containing protein 19
3swm_C	3e-32	2	109	69	173	NAC domain-containing protein 19
3swm_D	3e-32	2	109	69	173	NAC domain-containing protein 19
3swp_A	3e-32	2	109	69	173	NAC domain-containing protein 19
3swp_B	3e-32	2	109	69	173	NAC domain-containing protein 19
3swp_C	3e-32	2	109	69	173	NAC domain-containing protein 19
3swp_D	3e-32	2	109	69	173	NAC domain-containing protein 19
4dul_A	2e-32	2	109	66	170	NAC domain-containing protein 19
4dul_B	2e-32	2	109	66	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866685.1	0.0	NAC domain-containing protein 21/22-like isoform X1
TrEMBL	A0A0K9QWR6	0.0	A0A0K9QWR6_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010666180.1	1e-108	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	5e-62	NAC domain containing protein 1