PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_130540_grkd.t1

Common Name

SOVF_130540

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 441aa MW: 46968.2 Da PI: 8.1703

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_130540_grkd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.7e-39	93	153	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ lkcprCds+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss Sp_130540_grkd.t1 93 EAPLKCPRCDSSNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKRSSS 153 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	76	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	95	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.73	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MVFSSVPLYL DPPNWQQHPN HQQLLQSNNN NGSVGNNNHD HQNHQQHLLQ PPSIPQHPGQ 60 SPMGMGGGGG GGQLMRPNSM AEKARQAKIP PPEAPLKCPR CDSSNTKFCY FNNYSLTQPR 120 HFCKSCRRYW TRGGALRNVP VGGGCRRNKR SSSKSSGGGG GGGGGSGSSS SKSSLSSPTR 180 IGMVGGERIP LHMDLVSTSG LGPNFTGLPS GGGGSGGMSS FMASLQNIAQ LGMGNLGLSF 240 GGGLNTPPHH PLGGLGGLSG GVGNEHHHHH HHQHQLDFPQ LNQNSVNNQQ QVHQFPNFLG 300 GFEIPGSSAG AGLYTSSFQN DQQGIDDDDE HQHQHQHQHQ HQNQQNENDD QVNNLQKSCP 360 STMMSQLAPV KTESDAQRLN LAKQFMGIST SDPNNNNNNN NNATGHQFWG GNIGNNNNSA 420 GATSMWTDLS GLNSSSTSHL L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MVFSSVPLYL DPPNWQQHPN HQQLLQSNNN NGSVGNNNHD HQNHQQHLLQ PPSIPQHPGQ  60
SPMGMGGGGG GGQLMRPNSM AEKARQAKIP PPEAPLKCPR CDSSNTKFCY FNNYSLTQPR  120
HFCKSCRRYW TRGGALRNVP VGGGCRRNKR SSSKSSGGGG GGGGGSGSSS SKSSLSSPTR  180
IGMVGGERIP LHMDLVSTSG LGPNFTGLPS GGGGSGGMSS FMASLQNIAQ LGMGNLGLSF  240
GGGLNTPPHH PLGGLGGLSG GVGNEHHHHH HHQHQLDFPQ LNQNSVNNQQ QVHQFPNFLG  300
GFEIPGSSAG AGLYTSSFQN DQQGIDDDDE HQHQHQHQHQ HQNQQNENDD QVNNLQKSCP  360
STMMSQLAPV KTESDAQRLN LAKQFMGIST SDPNNNNNNN NNATGHQFWG GNIGNNNNSA  420
GATSMWTDLS GLNSSSTSHL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	165	SGGGGGGGGGS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861978.1	0.0	dof zinc finger protein DOF2.4-like
TrEMBL	A0A0K9QXD0	0.0	A0A0K9QXD0_SPIOL; Uncharacterized protein
STRING	XP_010685788.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	2e-35	OBF-binding protein 3