PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_130370_egdr.t1
Common NameSOVF_130370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 257aa    MW: 27500.9 Da    PI: 6.2374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_130370_egdr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00125476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  Sp_130370_egdr.t1 54 FTCKTCDRKFPSFQALGGHRASH 76
                       89**********99999998887 PP
2zf-C2H214.30.00012100122123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg  Fs+   L  H+r+H
  Sp_130370_egdr.t1 100 HSCKFCGIEFSTGQALGGHMRRH 122
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.71E-952122No hitNo description
SMARTSM003550.135476IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.935481IPR007087Zinc finger, C2H2
PfamPF139121.5E-105478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016100122IPR007087Zinc finger, C2H2
SMARTSM003550.024100122IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-8100124IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNTTTIQTQR GAAGDIETSA MANCLMLLSA HSAAVSSFTG VVGNAEQQVA GRMFTCKTCD  60
RKFPSFQALG GHRASHKKAK SPNSVDFPDE SGLPAKQKIH SCKFCGIEFS TGQALGGHMR  120
RHRENIVVVG GGGVVSAAVS GVTTEGSSGS SESNDGGKKR KMSDDVSEVP ILKKSSSSKR  180
VCLDLELDLA LWKKVEAEKM VAVAKYADDD YEIEHGEIVE QHHEQAAAAS GVEDVSGVED  240
EEKDFLKLEL RQPINCW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865244.10.0zinc finger protein ZAT12
TrEMBLA0A0K9QZC00.0A0A0K9QZC0_SPIOL; Uncharacterized protein
STRINGXP_010685828.12e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-26C2H2 family protein