PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_129590_ygxx.t1

Common Name

SOVF_129590

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 745aa MW: 84797.2 Da PI: 6.6061

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_129590_ygxx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.2	1.6e-114	372	743	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cA+ v+++d + a+ +L+++++++sp gd +qRla+y++ +L+arla+++s++yk l +++t+ +++l+a+ l+ ++P+ k Sp_129590_ygxx.t1 372 LRTLLTTCAQSVAADDRRTANDYLKQIRQHSSPLGDGNQRLAHYMADGLEARLAGTGSQIYKGLISKKTT---AADVLKAYLLYLAACPFRK 460 5789**********************************************************999998...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 +s++ N+ I + + +++++HiiDf+i +G+QWp+++q + R++gpp++RiTg++ p++g +e++eetg+rL+++A+e++vpfe+++ + Sp_129590_ygxx.t1 461 LSNFFSNKSIAKRTRKASKIHIIDFGILYGFQWPTFIQRQSMREGGPPKIRITGIDFPQPGfrPAERVEETGRRLENYAQEFKVPFEYHA-I 551 ********************************************************9*************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 akr+++++le+++++++E+l+Vn++++l++l+de+vs+es r+ vLkl+++l+P+++++ + ++n++ F++rf eal +ysa fd+le+ Sp_129590_ygxx.t1 552 AKRWDTIQLEDFDIDEDEVLVVNCIYRLKNLPDETVSVESSRNIVLKLIRKLKPDIFIHGVVNGSYNAPYFVTRFREALFHYSAQFDMLETI 643 **************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pre er+ +Er ll+re+ nvvaceg er+er et+++W+ r +aGF+++pl++++ + a l ++ + + ++++e+s +l+lgWk+r Sp_129590_ygxx.t1 644 VPREYIERMLIERDLLAREALNVVACEGWERVERPETYKQWKIRSIRAGFTQLPLDSEIKERALLQVHSAYHKDFMIDEDSRWLLLGWKGRV 735 *******************************************************************888************** PP GRAS 367 LvsvSaWr 374 L+++S W+ Sp_129590_ygxx.t1 736 LFALSTWQ 743 *****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.491	346	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-112	372	743	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MDHGFPVYSN YDYDYMNGLP NLGNGFVGHN HNHNNNIMDV KGVNYYFPDP SSRELSSVCN 60 VVTHEDSLNE DYDFSDSVLR FINQILVEED VEGKGCMLQE SLQHQAVQDA EKSLYEVIEK 120 SYLPERVSHP NPTYICSNFN IPESYFADNS YRCYNNGTVD SNSQSVDPSW GGEKGQYYGS 180 NVDNAFPLYQ QPVSSCSSTS ANNALDGGLV DSQVSSFGVY DLCAESQSIS QFNKGVEEAN 240 KFLPSQSGLF VSADMNRLPK NSEKCNEALV NPGLKRDKDV IRDKFQGRKH GFGDAEEERF 300 SKQAATYDDS KVRSDMFDKV LLHHGGDKNE LVVSLRANLQ TAATKKTEQN DQSKSGPKSR 360 KKKGGRKEVV DLRTLLTTCA QSVAADDRRT ANDYLKQIRQ HSSPLGDGNQ RLAHYMADGL 420 EARLAGTGSQ IYKGLISKKT TAADVLKAYL LYLAACPFRK LSNFFSNKSI AKRTRKASKI 480 HIIDFGILYG FQWPTFIQRQ SMREGGPPKI RITGIDFPQP GFRPAERVEE TGRRLENYAQ 540 EFKVPFEYHA IAKRWDTIQL EDFDIDEDEV LVVNCIYRLK NLPDETVSVE SSRNIVLKLI 600 RKLKPDIFIH GVVNGSYNAP YFVTRFREAL FHYSAQFDML ETIVPREYIE RMLIERDLLA 660 REALNVVACE GWERVERPET YKQWKIRSIR AGFTQLPLDS EIKERALLQV HSAYHKDFMI 720 DEDSRWLLLG WKGRVLFALS TWQPT

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MDHGFPVYSN YDYDYMNGLP NLGNGFVGHN HNHNNNIMDV KGVNYYFPDP SSRELSSVCN  60
VVTHEDSLNE DYDFSDSVLR FINQILVEED VEGKGCMLQE SLQHQAVQDA EKSLYEVIEK  120
SYLPERVSHP NPTYICSNFN IPESYFADNS YRCYNNGTVD SNSQSVDPSW GGEKGQYYGS  180
NVDNAFPLYQ QPVSSCSSTS ANNALDGGLV DSQVSSFGVY DLCAESQSIS QFNKGVEEAN  240
KFLPSQSGLF VSADMNRLPK NSEKCNEALV NPGLKRDKDV IRDKFQGRKH GFGDAEEERF  300
SKQAATYDDS KVRSDMFDKV LLHHGGDKNE LVVSLRANLQ TAATKKTEQN DQSKSGPKSR  360
KKKGGRKEVV DLRTLLTTCA QSVAADDRRT ANDYLKQIRQ HSSPLGDGNQ RLAHYMADGL  420
EARLAGTGSQ IYKGLISKKT TAADVLKAYL LYLAACPFRK LSNFFSNKSI AKRTRKASKI  480
HIIDFGILYG FQWPTFIQRQ SMREGGPPKI RITGIDFPQP GFRPAERVEE TGRRLENYAQ  540
EFKVPFEYHA IAKRWDTIQL EDFDIDEDEV LVVNCIYRLK NLPDETVSVE SSRNIVLKLI  600
RKLKPDIFIH GVVNGSYNAP YFVTRFREAL FHYSAQFDML ETIVPREYIE RMLIERDLLA  660
REALNVVACE GWERVERPET YKQWKIRSIR AGFTQLPLDS EIKERALLQV HSAYHKDFMI  720
DEDSRWLLLG WKGRVLFALS TWQPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-47	379	744	26	380	Protein SCARECROW
5b3h_A	1e-47	379	744	25	379	Protein SCARECROW
5b3h_D	1e-47	379	744	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856937.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0K9QXM3	0.0	A0A0K9QXM3_SPIOL; Uncharacterized protein
STRING	XP_006480839.1	0.0	(Citrus sinensis)
STRING	XP_006429104.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein