PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_129220_gqpn.t1
Common NameSOVF_129220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 385aa    MW: 42488.6 Da    PI: 8.696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_129220_gqpn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-11125151127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        yktelC+ +  +G C+yG +C+FaHg+
  Sp_129220_gqpn.t1 125 YKTELCMSWENSGVCHYGHKCQFAHGK 151
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.8E-16123156IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10124155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202124152IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8125151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MKGYYSSSSS SVNSSNGSPK MNLRNDSVSP MNLPKESVLM RYLRSGQPSD LDFSSSSSKR  60
SPILTYHNSG SSSCKSPLSA VENLEDDVLV MDGILVDSNK VSKSAGKFRS PGSSDSSSNS  120
AINLYKTELC MSWENSGVCH YGHKCQFAHG KEEVRPTPNL VRKDHHIMDM EFVNPYYSPQ  180
SSTYGSESRR FALETVVTPP AKETAKSMFN RALPQQEAPM FVTSNPYYSP QSSTYSSDSN  240
IFALDTMVTP PAKETAKSFL NRPLPQPKEA PTFNTSNPYY SPVSSTYNSC STRKFALKTK  300
ETPPPTKEAA NSKLHQALPI QSKNAPTVSP HLTSPDWSPL DDNITITYAS SNETPPRKAI  360
DEHMHRAIYG PTQMKRLPVF VDICL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838174.10.0uncharacterized protein LOC110777900 isoform X1
TrEMBLA0A0K9QZV40.0A0A0K9QZV4_SPIOL; Uncharacterized protein
STRINGXP_010687506.11e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-09C3H family protein