PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_127650_nrid.t1
Common NameSOVF_127650
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 328aa    MW: 35350.9 Da    PI: 7.8176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_127650_nrid.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.9e-192671147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Sp_127650_nrid.t1 26 KGPWSPEEDDALTRLVQKHGPRNWTLISKSIP-GRSGKSCRLRWCNQ 71
                       79******************************.***********985 PP
2Myb_DNA-binding52.11.5e-1680122347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T+eEd+ + +a++++G++ W+tIar +  gRt++ +k++w++ 
  Sp_127650_nrid.t1  80 AFTPEEDDTIMRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 122
                        79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4142176IPR017930Myb domain
SuperFamilySSF466894.12E-3223119IPR009057Homeodomain-like
SMARTSM007171.7E-172574IPR001005SANT/Myb domain
PfamPF002494.6E-192671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-262779IPR009057Homeodomain-like
CDDcd001671.58E-162870No hitNo description
SMARTSM007174.1E-1377125IPR001005SANT/Myb domain
PROSITE profilePS5129420.43378127IPR017930Myb domain
CDDcd001671.35E-1080123No hitNo description
PfamPF002494.4E-1480122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2380126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNTCSSSDNN NHTSVKLNRK EVDRIKGPWS PEEDDALTRL VQKHGPRNWT LISKSIPGRS  60
GKSCRLRWCN QLSPQVEHRA FTPEEDDTIM RAHARFGNKW ATIARLLSGR TDNAIKNHWN  120
STLKRKCSAM VSPAPDDFPG DFPPPLKRAM SEGADVILRN VSGLSLNTNP GSPGSSDASD  180
SGSHVYRPVP VPGPVNIPPP PVVVSPATDL SLSLPGSDSC EVSNSDHEPM TGCSPIQVFP  240
TSSPTAFSPV MFPPPPIPSP PPSAFSQEFL AVMQDMIKKE VKTYMEGVEM SNNNGVVVGG  300
FNHGGFCSQA ADGVMRAAMS RIGIGKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-42251263104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-42251263104C-Myb DNA-Binding Domain
1msf_C1e-42251263104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852344.10.0transcription factor MYB44-like isoform X1
RefseqXP_021852345.10.0transcription factor MYB44-like isoform X2
SwissprotO231602e-85MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K9R0E40.0A0A0K9R0E4_SPIOL; Uncharacterized protein
STRINGXP_010679545.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-74myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]