PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_127540_qqae.t1

Common Name

SOVF_127540

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 920aa MW: 101558 Da PI: 6.5914

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_127540_qqae.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	595	645	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+isl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Sp_127540_qqae.t1 595 QKTISLDILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIARWPSRKIKKV 645 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	582	665	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	597	645	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-22	815	909	No hit	No description
PROSITE profile	PS51745	22.118	824	907	IPR000270	PB1 domain
SMART	SM00666	9.6E-23	824	907	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-21	825	905	No hit	No description
CDD	cd06407	5.12E-40	825	904	No hit	No description
Pfam	PF00564	3.5E-16	826	905	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MDNGSFNPAN NPPVFGNIDY DLMEQLLDEG CWLQTADGSN LLQSSTSPGQ GPSPSSSRGL 60 SYPSSFSFPC LEPSLTQAEQ AVDSDCQNNI NSSAITPASV AAAALNQARN FSWEGNELNR 120 ILWIEPKANS GPSTSVGDRL MSAVYQLKEL NRNRDVLIQI WVPIKKGLKS FLTTAEQPYF 180 HQPSSTRLVH YRDVSAKYEF LADEDTKQAL GLPGRVFLGK APEWTPDVRF FRQEEYPRSV 240 YAHKYDVRGS IALPVFEKGS GDSLGVVEII MTTEKFDYRP EVESVCKALE TVHLRSSEIL 300 NIPPEQARKG TDEVVQPEIL TVVRAVCDTL NLPLAQTWAP CSQQGKGGCW HSEKNVHCVS 360 IIDSACYVRD ERVMDFHKAC SDHHLLRSQG GIVGKAFDTN QPCYATDVTE FSKVEYPLSH 420 HAKMFGLRGA VAIRLRGICH ETNDYVLELY LPSDFQENGL SFHTKIWQAV SMVIQQHCQY 480 LHFITDKDFE QKASFQGKTV ADNEIKETSW FSQMMEPQRK GKEVVVSLEF GEDEPSKGFK 540 VMNWSDSEPS LQLGQALSDS ENINQDSASK GISGTSSGSR LPLSARSERR RTKTQKTISL 600 DILRQYFAGS LKDAAKSIGV CPTTLKRICR QHGIARWPSR KIKKVDHSLR KLQLVIDSVQ 660 GAEGSIQLSS FYSKFPELNS PTTQAKPSQV SSINLNNQPK QQLTTQPEGN IYPSGATTSN 720 SPASTSSSQT STSSYCFSSG ANLSSTPVTT IASGSKDAST AEETGGSLKR ARSEAELQGL 780 ITKKEATQIL ERSQSNKTLA EHPSFETLPP FPMTKSWLSR EAGVFKAKAS FGEEKVRFSI 840 LPNTGFQQLQ QEIVKRFSLE DLSKMGIKYL DDDKEWVLLT CDADLEECID IHKSSGSHTI 900 KLSISPLSSL AGSFGSSGLS

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MDNGSFNPAN NPPVFGNIDY DLMEQLLDEG CWLQTADGSN LLQSSTSPGQ GPSPSSSRGL  60
SYPSSFSFPC LEPSLTQAEQ AVDSDCQNNI NSSAITPASV AAAALNQARN FSWEGNELNR  120
ILWIEPKANS GPSTSVGDRL MSAVYQLKEL NRNRDVLIQI WVPIKKGLKS FLTTAEQPYF  180
HQPSSTRLVH YRDVSAKYEF LADEDTKQAL GLPGRVFLGK APEWTPDVRF FRQEEYPRSV  240
YAHKYDVRGS IALPVFEKGS GDSLGVVEII MTTEKFDYRP EVESVCKALE TVHLRSSEIL  300
NIPPEQARKG TDEVVQPEIL TVVRAVCDTL NLPLAQTWAP CSQQGKGGCW HSEKNVHCVS  360
IIDSACYVRD ERVMDFHKAC SDHHLLRSQG GIVGKAFDTN QPCYATDVTE FSKVEYPLSH  420
HAKMFGLRGA VAIRLRGICH ETNDYVLELY LPSDFQENGL SFHTKIWQAV SMVIQQHCQY  480
LHFITDKDFE QKASFQGKTV ADNEIKETSW FSQMMEPQRK GKEVVVSLEF GEDEPSKGFK  540
VMNWSDSEPS LQLGQALSDS ENINQDSASK GISGTSSGSR LPLSARSERR RTKTQKTISL  600
DILRQYFAGS LKDAAKSIGV CPTTLKRICR QHGIARWPSR KIKKVDHSLR KLQLVIDSVQ  660
GAEGSIQLSS FYSKFPELNS PTTQAKPSQV SSINLNNQPK QQLTTQPEGN IYPSGATTSN  720
SPASTSSSQT STSSYCFSSG ANLSSTPVTT IASGSKDAST AEETGGSLKR ARSEAELQGL  780
ITKKEATQIL ERSQSNKTLA EHPSFETLPP FPMTKSWLSR EAGVFKAKAS FGEEKVRFSI  840
LPNTGFQQLQ QEIVKRFSLE DLSKMGIKYL DDDKEWVLLT CDADLEECID IHKSSGSHTI  900
KLSISPLSSL AGSFGSSGLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021867276.1	0.0	protein NLP2-like
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein