PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_126230_mwhz.t2
Common NameSOVF_126230
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 366aa    MW: 40397.1 Da    PI: 7.7176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_126230_mwhz.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33190247259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Sp_126230_mwhz.t2 190 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCHH 247
                        8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-34174248IPR003657WRKY domain
SuperFamilySSF1182902.48E-28181247IPR003657WRKY domain
PROSITE profilePS5081129.826184249IPR003657WRKY domain
SMARTSM007749.3E-39189248IPR003657WRKY domain
PfamPF031066.5E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSDSNQPDP TESTWSLSPP SPSPPPRPNS GSDHVFFFNS DSHNNHMLSD QFTWTYNSSD  60
LRHAVESSSH ADVDDYQPSD TPITTAAAAS SSGCQVSPSV DQTSDVMPPN PLASSSSSED  120
LADKNVGRAV VTAAVADTSY EYYFKERWMD HILRSDPIRS KRKKVKKKGQ KRTRQPRFAF  180
MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC TVKKRVERSS EDPSIVITTY  240
EGQHCHHTIG FPRSSGFLNH EGGGFLGQFG PPNLSSQSSF LYPGMQLYTQ ENSVTSRSVA  300
QGSVSNTNVV QAQAQTQAYD ERRTPSNARE SPSSSVSHHS TQQTPSLSSS GEGLLGDIVP  360
PGMRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25179246774Probable WRKY transcription factor 4
2lex_A1e-25179246774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835990.10.0probable WRKY transcription factor 57
TrEMBLA0A0K9QYR50.0A0A0K9QYR5_SPIOL; Uncharacterized protein
STRINGXP_010680728.11e-117(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-51WRKY DNA-binding protein 57